RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ZNF747Q9BV97 191 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 TMEM191AQ9H0A3 160 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 C1RLQ9NZP8 487 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 KBTBD11-OT1A0A1B0GTJ5 212 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 hADV38S2A0JD32 116 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 J3QW42 95 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 K7ERU9 68 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 FCN3O75636 299 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 HLA-DRB1P01911 266 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 HTR1DP28221 377 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 TMEM97Q5BJF2 176 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 C1orf185Q5T7R7 199 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 S100A7AQ86SG5 101 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 PCP2Q8IVA1 136 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 CORO2AQ92828 525 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 FLYWCH2Q96CP2 140 aaKnown RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 MAP1LC3CQ9BXW4 147 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 MRPL20Q9BYC9 149 aaKnown RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 NDUFA4L2Q9NRX3 87 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 PEF1Q9UBV8 284 aaKnown RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 LOC389332A0A1B0GUA5 103 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 SLC25A17O43808 307 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 P01737 135 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 PPIAL4GP0DN37 164 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 TNFRSF1AP19438 455 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 IFI27P40305 119 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 LGALS7P47929 136 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 RPS20P60866 119 aaKnown RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 ATP5L2Q7Z4Y8 100 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 EXOC3-AS1Q8N2X6 119 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 CHCHD1Q96BP2 118 aaKnown RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 C17orf77Q96MU5 243 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 GPR82Q96P67 336 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 ZNF430Q9H8G1 570 aaPredicted RBP3.88□□□□□ -1.79
LIMA1-214ENST00000552783 PRNDQ9UKY0 176 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 KLF12Q9Y4X4 402 aa3.88□□□□□ -1.79
LIMA1-214ENST00000552783 HSBP1L1C9JCN9 74 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 NDUFB3O43676 98 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 CNIH1O95406 144 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 LTAP01374 205 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 IGLV2-11P01706 119 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 GLRXP35754 106 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 FOXC1Q12948 553 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 HES1Q14469 280 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 KIR3DS1Q14943 382 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 ZNF474Q6S9Z5 364 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-214ENST00000552783 OR8A1Q8NGG7 326 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 INSIG2Q9Y5U4 225 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 COL12A1Q99715 3063 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 CUBNO60494 3623 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 AGRNO00468 2067 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 K7EM74 188 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 GNG7O60262 68 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 LIPFP07098 398 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 PAX2Q02962 417 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 POU2AF1Q16633 256 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 PET117Q6UWS5 81 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 RBPMS2Q6ZRY4 209 aaKnown RBP3.87□□□□□ -1.79
LIMA1-214ENST00000552783 C22orf34Q6ZV56 151 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 PDPNQ86YL7 162 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 BPIFA4PQ86YQ2 179 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 OR1L8Q8NGR8 309 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 PERPQ96FX8 193 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 ZNF714Q96N38 554 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 NDFIP1Q9BT67 221 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 MRPL32Q9BYC8 188 aaKnown RBP3.87□□□□□ -1.79
LIMA1-214ENST00000552783 THYN1Q9P016 225 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 F11RQ9Y624 299 aaKnown RBP3.87□□□□□ -1.79
LIMA1-214ENST00000552783 A0A0G2JLM5 398 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 TCRBV4S1A1TA0A5B7 111 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 FBLL1A6NHQ2 334 aaKnown RBP3.87□□□□□ -1.79
LIMA1-214ENST00000552783 C9orf118A6NHY6 69 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 FAM90A27PA6NNH2 459 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 LYNX1G3V0Z9 82 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 C16orf97H3BN30 126 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 K7ERJ3 54 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 CHEK1O14757 476 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 OR5AL1P0C617 328 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 LYNX1P0DP58 116 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 KIR2DS2P43631 304 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 TIMM23BQ5SRD1 257 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 NEGR1Q7Z3B1 354 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 SVIPQ8NHG7 77 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 CLUHP3Q96NS8 147 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 C19orf24Q9BVV8 132 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 PLSCR4Q9NRQ2 329 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 SLC25A15Q9Y619 301 aa3.87□□□□□ -1.79
LIMA1-214ENST00000552783 AKAP13Q12802 2813 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 ARHGAP32A7KAX9 2087 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 A8MWL6 223 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 GAS8-AS1O95177 125 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 LHBP01229 141 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 IGHV1-46P01743 117 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 TCRAP04437 139 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 GP9P14770 177 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 CD40P25942 277 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 CRIP1P50238 77 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 MRGPRG-AS1Q2M3A8 158 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 PLA2G2CQ5R387 149 aa3.86□□□□□ -1.79
LIMA1-214ENST00000552783 ADAMTSL5Q6ZMM2 481 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms