RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 H0Y8G0 127 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 LIPFP07098 398 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 RHOGP84095 191 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 VAMP3Q15836 100 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 PVRIGQ6DKI7 326 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 PET117Q6UWS5 81 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 LINC00311Q8N616 119 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 H1FXQ92522 213 aaKnown RBP4.31□□□□□ -1.72
LIMA1-212ENST00000552491 TRGV9Q99603 122 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM191AQ9H0A3 160 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 CTSZQ9UBR2 303 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 DCHS2Q6V1P9 2916 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 APC2O95996 2303 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 A0A087X0K7 114 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 HSBP1L1C9JCN9 74 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 KLK10O43240 276 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 NCR2O95944 276 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 CSN3P07498 182 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 RPS20P60866 119 aaKnown RBP4.31□□□□□ -1.72
LIMA1-212ENST00000552491 VMA21Q3ZAQ7 101 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 SAPCD1Q5SSQ6 148 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 C12orf54Q6X4T0 127 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 C8orf31Q8N9H6 132 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 TEX45Q8NA69 505 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM116Q8NCL8 245 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 NEU4Q8WWR8 484 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-212ENST00000552491 C17orf77Q96MU5 243 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 MAP1LC3CQ9BXW4 147 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 MS4A6AQ9H2W1 248 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 SCRT2Q9NQ03 307 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 TIMM8BQ9Y5J9 83 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-212ENST00000552491 AKAP13Q12802 2813 aa4.31□□□□□ -1.72
LIMA1-212ENST00000552491 K7EM74 188 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 CHEK1O14757 476 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 TNFRSF13BO14836 293 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-212ENST00000552491 SNAI2O43623 268 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 ENSAO43768 121 aaKnown RBP4.3□□□□□ -1.72
LIMA1-212ENST00000552491 HLA-DRB1P01911 266 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 FAM106CPP0CH98 169 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 PSG1P11464 419 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 TNFRSF1AP19438 455 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 MC5RP33032 325 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 LGALS7P47929 136 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 DLX6P56179 175 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 PLP1P60201 277 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 ADIPOQQ15848 244 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 FAM106AQ4KMX7 169 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 LCE1DQ5T752 114 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 C16orf54Q6UWD8 224 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 PRNTQ86SH4 94 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 Q86TA4 180 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 ZADH2Q8N4Q0 377 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 DEFB125Q8N687 156 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 C8orf46Q8TAG6 207 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 RNF24Q9Y225 148 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 ARHGAP32A7KAX9 2087 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.3□□□□□ -1.72
LIMA1-212ENST00000552491 SPAARA0A1B0GVQ0 90 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 CBY3A6NI87 242 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 C17orf100A8MU93 164 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 ARMS2P0C7Q2 107 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 LOXP28300 417 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-212ENST00000552491 RNF151Q2KHN1 245 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 C2orf91Q6ZV80 131 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 GOLT1AQ6ZVE7 132 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 PRSS33Q8NF86 280 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 CCL17Q92583 94 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 HSPB8Q9UJY1 196 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 MUC6Q6W4X9 2439 aa4.3□□□□□ -1.72
LIMA1-212ENST00000552491 A0A096LNJ9 63 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 TRAV8-6A0A0B4J262 113 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM178BH3BS89 294 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 CRYGBP07316 175 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 CRIP1P50238 77 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 LYZP61626 148 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 PAX2Q02962 417 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 LOXL1Q08397 574 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-212ENST00000552491 ACACAQ13085 2346 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 C1orf185Q5T7R7 199 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 AMMECR1LQ6DCA0 310 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 ARL6IP6Q8N6S5 226 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 NUP37Q8NFH4 326 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 PIEZO2Q9H5I5 2752 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 OTORQ9NRC9 128 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 ANKRD11Q6UB99 2663 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-212ENST00000552491 PPIAL4EA0A075B759 164 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 TRBV6-1A0A0K0K1D8 114 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 TEX22C9J3V5 150 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 PPIAL4DF5H284 164 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 CD5LO43866 347 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 IGLC1P0CG04 106 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 PPIAL4FP0DN26 164 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 RPL27AP46776 148 aaKnown RBP4.29□□□□□ -1.72
LIMA1-212ENST00000552491 HIST1H1AQ02539 215 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-212ENST00000552491 LDLRAD2Q5SZI1 272 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 LINC01545Q5VT33 79 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 BCL6BQ8N143 479 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-212ENST00000552491 DEFB124Q8NES8 71 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 SLC25A39Q9BZJ4 359 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM14CQ9P0S9 112 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms