RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 RXFP4Q8TDU9 374 aa11.76□□□□□ -0.53
VPS29-204ENST00000548259 AP3S1Q92572 193 aa11.76□□□□□ -0.53
VPS29-204ENST00000548259 SLC25A32Q9H2D1 315 aa11.76□□□□□ -0.53
VPS29-204ENST00000548259 TRAV26-1A0A087WT03 109 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 PLAC8L1A1L4L8 177 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 CRYM-AS1A6NIL9 109 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 ZNF98A6NK75 572 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 DISC1C4P0D8 188 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 AZU1P20160 251 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 SMCO1Q147U7 214 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 CDPF1Q6NVV7 123 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 YIPF6Q96EC8 236 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 RTBDNQ9BSG5 229 aaPredicted RBP11.75□□□□□ -0.53
VPS29-204ENST00000548259 TMEM147Q9BVK8 224 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 RBKSQ9H477 322 aa11.75□□□□□ -0.53
VPS29-204ENST00000548259 TRAV12-2A0A075B6T6 113 aa11.74□□□□□ -0.53
VPS29-204ENST00000548259 AKR1C4P17516 323 aa11.74□□□□□ -0.53
VPS29-204ENST00000548259 FGL1Q08830 312 aa11.74□□□□□ -0.53
VPS29-204ENST00000548259 LYPD1Q8N2G4 141 aa11.74□□□□□ -0.53
VPS29-204ENST00000548259 BPIFCQ8NFQ6 507 aa11.74□□□□□ -0.53
VPS29-204ENST00000548259 KRTAP1-5Q9BYS1 174 aa11.74□□□□□ -0.53
VPS29-204ENST00000548259 NOP10Q9NPE3 64 aaKnown RBP11.74□□□□□ -0.53
VPS29-204ENST00000548259 ZNF586Q9NXT0 402 aa11.74□□□□□ -0.53
VPS29-204ENST00000548259 MRPS16Q9Y3D3 137 aaKnown RBP11.74□□□□□ -0.53
VPS29-204ENST00000548259 ERVFC1-1P60608 527 aa11.73□□□□□ -0.53
VPS29-204ENST00000548259 SSBP1Q04837 148 aaKnown RBP11.73□□□□□ -0.53
VPS29-204ENST00000548259 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.73□□□□□ -0.53
VPS29-204ENST00000548259 CCDC28AQ8IWP9 274 aa11.73□□□□□ -0.53
VPS29-204ENST00000548259 OR1S1Q8NH92 325 aa11.73□□□□□ -0.53
VPS29-204ENST00000548259 TMEM263Q8WUH6 116 aaKnown RBP11.73□□□□□ -0.53
VPS29-204ENST00000548259 UHRF2Q96PU4 802 aa11.73□□□□□ -0.53
VPS29-204ENST00000548259 SLC25A39Q9BZJ4 359 aaPredicted RBP11.73□□□□□ -0.53
VPS29-204ENST00000548259 EXTL2Q9UBQ6 330 aa11.73□□□□□ -0.53
VPS29-204ENST00000548259 PAIP2BQ9ULR5 123 aaKnown RBP11.73□□□□□ -0.53
VPS29-204ENST00000548259 A0A0B4J2A0 478 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 H3BNG1 76 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 IFNA5P01569 189 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 ORM2P19652 201 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 RPP30P78346 268 aaKnown RBP11.72□□□□□ -0.53
VPS29-204ENST00000548259 SRPXP78539 464 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 HIST1H1AQ02539 215 aaPredicted RBP11.72□□□□□ -0.53
VPS29-204ENST00000548259 Q5VSD8 79 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 S100A7AQ86SG5 101 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 THAP8Q8NA92 274 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 SCGB3A2Q96PL1 93 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 SHPKQ9UHJ6 478 aa11.72□□□□□ -0.53
VPS29-204ENST00000548259 A0A0J9YY99 117 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 H7BYZ3 331 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 ANXA3P12429 323 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 MRPS10P82664 201 aaKnown RBP11.71□□□□□ -0.53
VPS29-204ENST00000548259 ESRGQ1W209 222 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 RNF182Q8N6D2 247 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 LRRC20Q8TCA0 184 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 PRRT1Q99946 306 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 GPR132Q9UNW8 380 aa11.71□□□□□ -0.53
VPS29-204ENST00000548259 A0A087WXM4 84 aa11.7□□□□□ -0.54
VPS29-204ENST00000548259 ZNF701M0R085 212 aaPredicted RBP11.7□□□□□ -0.54
VPS29-204ENST00000548259 RLN2P04090 185 aa11.7□□□□□ -0.54
VPS29-204ENST00000548259 RPL7P18124 248 aaKnown RBP11.7□□□□□ -0.54
VPS29-204ENST00000548259 CDKN1BP46527 198 aa11.7□□□□□ -0.54
VPS29-204ENST00000548259 LINC00315P59091 139 aa11.7□□□□□ -0.54
VPS29-204ENST00000548259 NCS1P62166 190 aa11.7□□□□□ -0.54
VPS29-204ENST00000548259 OR8A1Q8NGG7 326 aa11.7□□□□□ -0.54
VPS29-204ENST00000548259 RNASE8Q8TDE3 154 aaKnown RBP11.7□□□□□ -0.54
VPS29-204ENST00000548259 RAP2BP61225 183 aa11.69□□□□□ -0.54
VPS29-204ENST00000548259 VBP1P61758 197 aa11.69□□□□□ -0.54
VPS29-204ENST00000548259 IGFL4Q6B9Z1 124 aa11.69□□□□□ -0.54
VPS29-204ENST00000548259 C20orf144Q9BQM9 153 aa11.69□□□□□ -0.54
VPS29-204ENST00000548259 RNF24Q9Y225 148 aa11.69□□□□□ -0.54
VPS29-204ENST00000548259 TRAV8-2A0A0B4J237 113 aa11.68□□□□□ -0.54
VPS29-204ENST00000548259 SNURFLB1AK76 121 aa11.68□□□□□ -0.54
VPS29-204ENST00000548259 MED6O75586 246 aa11.68□□□□□ -0.54
VPS29-204ENST00000548259 AKAIN1P0CW23 69 aa11.68□□□□□ -0.54
VPS29-204ENST00000548259 FAAP20Q6NZ36 180 aa11.68□□□□□ -0.54
VPS29-204ENST00000548259 LYZL2Q7Z4W2 148 aa11.68□□□□□ -0.54
VPS29-204ENST00000548259 NFE4Q86UQ8 179 aa11.68□□□□□ -0.54
VPS29-204ENST00000548259 CIB3Q96Q77 187 aaPredicted RBP11.68□□□□□ -0.54
VPS29-204ENST00000548259 IGKV1OR2-108A0A075B7D4 117 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 GAGE12BA1L429 117 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 FAM229AH3BQW9 127 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 GAGE7O76087 117 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 ATP6V1G2O95670 118 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 GAGE12FP0CL80 117 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 GAGE12GP0CL81 117 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 GAGE12IP0CL82 117 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 AKR1C1Q04828 323 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 C17orf77Q96MU5 243 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 FUNDC2Q9BWH2 189 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 SCP2D1Q9UJQ7 156 aa11.67□□□□□ -0.54
VPS29-204ENST00000548259 SIVA1O15304 175 aa11.66□□□□□ -0.54
VPS29-204ENST00000548259 IAPPP10997 89 aa11.66□□□□□ -0.54
VPS29-204ENST00000548259 XGP55808 180 aa11.66□□□□□ -0.54
VPS29-204ENST00000548259 PSG3Q16557 428 aa11.66□□□□□ -0.54
VPS29-204ENST00000548259 CLVS1Q8IUQ0 354 aaPredicted RBP11.66□□□□□ -0.54
VPS29-204ENST00000548259 C18orf15Q96N68 181 aa11.66□□□□□ -0.54
VPS29-204ENST00000548259 HIGD1AQ9Y241 93 aa11.66□□□□□ -0.54
VPS29-204ENST00000548259 CXCL3P19876 107 aa11.65□□□□□ -0.54
VPS29-204ENST00000548259 LINC00612Q8N6U2 182 aa11.65□□□□□ -0.54
VPS29-204ENST00000548259 OR51S1Q8NGJ8 323 aa11.65□□□□□ -0.54
VPS29-204ENST00000548259 RPUSD4Q96CM3 377 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms