RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ATRAIDQ6UW56 229 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 TMEM217Q8N7C4 229 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 THAP8Q8NA92 274 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 MAPK1IP1LQ8NDC0 245 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 OCC1Q8TAD7 63 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 TAF15Q92804 592 aaKnown RBP eCLIP6.6□□□□□ -1.35
VPS29-203ENST00000546588 HSPB9Q9BQS6 159 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 NPCDR1Q9BY65 106 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 SMIM3Q9BZL3 60 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 NPVFQ9HCQ7 196 aa6.6□□□□□ -1.35
VPS29-203ENST00000546588 ANK3Q12955 4377 aaKnown RBP6.6□□□□□ -1.35
VPS29-203ENST00000546588 TEX15Q9BXT5 2789 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 CREBBPQ92793 2442 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 IGKV1OR2-108A0A075B7D4 117 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 TRBV9A0A0B4J1U6 114 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 C1orf196B1AJZ1 125 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 H3BUA1 57 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 H3BUX3 64 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 I3L2K1 104 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 PRYO14603 147 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 CD24P25063 80 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 SNCAP37840 140 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 CFHR3Q02985 330 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 CLINT1Q14677 625 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 GUCA2BQ16661 112 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 DEFB112Q30KQ8 113 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 FAM110DQ8TAY7 271 aaPredicted RBP6.59□□□□□ -1.35
VPS29-203ENST00000546588 TMED6Q8WW62 240 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 FNDC4Q9H6D8 234 aaPredicted RBP6.59□□□□□ -1.35
VPS29-203ENST00000546588 PARP11Q9NR21 331 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 KCNIP2Q9NS61 270 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 VPREB3Q9UKI3 123 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 FAM96BQ9Y3D0 163 aa6.59□□□□□ -1.35
VPS29-203ENST00000546588 OTOGQ6ZRI0 2925 aa6.59□□□□□ -1.36
VPS29-203ENST00000546588 TRAV1-1A0A0B4J248 108 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 UBE2L5PA0A1B0GUS4 154 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 CLDN34H7C241 214 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 OR13C7P0DN81 318 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 S100A7P31151 101 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 OPRK1P41145 380 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 RPL29P47914 159 aaKnown RBP6.58□□□□□ -1.36
VPS29-203ENST00000546588 PLGLAQ15195 96 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 TMEM182Q6ZP80 229 aaPredicted RBP6.58□□□□□ -1.36
VPS29-203ENST00000546588 Q8N2B8 174 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 OR9G4Q8NGQ1 327 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 SSMEM1Q8WWF3 244 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 MGST2Q99735 147 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 RASL11BQ9BPW5 248 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 GGTLC1Q9BX51 225 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 SH3BGRL3Q9H299 93 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 SERTAD4Q9NUC0 356 aa6.58□□□□□ -1.36
VPS29-203ENST00000546588 FLNAP21333 2647 aaKnown RBP6.57□□□□□ -1.36
VPS29-203ENST00000546588 MXRA5Q9NR99 2828 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 IGKV1D-37A0A075B6S9 117 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 IGHV3OR16-10A0A075B7F0 116 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 PSMB11A5LHX3 300 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 NCBP2LA6PVI3 153 aaKnown RBP6.57□□□□□ -1.36
VPS29-203ENST00000546588 C17orf112F2Z3M2 114 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 K7EIM0 57 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 ATP6V0E1O15342 81 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 RS1O15537 224 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 CNIH1O95406 144 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 S100A2P29034 98 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 PPT1P50897 306 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 PLP1P60201 277 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 RUNX1Q01196 453 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 OR4X1Q8NH49 305 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 C8orf49Q96NF6 230 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 OR5B12Q96R08 314 aa6.57□□□□□ -1.36
VPS29-203ENST00000546588 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.56□□□□□ -1.36
VPS29-203ENST00000546588 MDFIC2A0A1B0GVS7 189 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 TMEM89A2RUT3 159 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 IGHV4-59P01825 116 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 FGF7P21781 194 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 RANP62826 216 aaKnown RBP6.56□□□□□ -1.36
VPS29-203ENST00000546588 FAM74A1Q5RGS3 127 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 BTNL8Q6UX41 500 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 SCGB1C1Q8TD33 95 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 VN1R17PQ8TDU5 208 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 MBD3L1Q8WWY6 194 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 SLC35E1Q96K37 410 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 TRGV9Q99603 122 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 MLST8Q9BVC4 326 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 C19orf24Q9BVV8 132 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 NKX6-2Q9C056 277 aaPredicted RBP6.56□□□□□ -1.36
VPS29-203ENST00000546588 THYN1Q9P016 225 aa6.56□□□□□ -1.36
VPS29-203ENST00000546588 SOX21Q9Y651 276 aaPredicted RBP6.56□□□□□ -1.36
VPS29-203ENST00000546588 FASNP49327 2511 aaKnown RBP6.56□□□□□ -1.36
VPS29-203ENST00000546588 F6UZH7 168 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 AGPAT2O15120 278 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 TSPAN13O95857 204 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 ANXA2RQ3ZCQ2 193 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 PDZD11Q5EBL8 140 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 TCTEX1D4Q5JR98 221 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 KCNIP4Q6PIL6 250 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 IL34Q6ZMJ4 242 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 TMEM219Q86XT9 240 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 LFNGQ8NES3 379 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 MYOZ3Q8TDC0 251 aa6.55□□□□□ -1.36
VPS29-203ENST00000546588 SCRT1Q9BWW7 348 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms