RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 NDUFA3O95167 84 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 THAP8Q8NA92 274 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV1-3A0A0C4DH29 117 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 ADARB2-AS1A8MUL3 147 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 KLF5Q13887 457 aaPredicted RBP6.38□□□□□ -1.39
VPS13D-211ENST00000543710 GAGE2EQ4V326 116 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 CLEC19AQ6UXS0 136 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 MRPL55Q7Z7F7 128 aaKnown RBP6.38□□□□□ -1.39
VPS13D-211ENST00000543710 TPRX1Q8N7U7 411 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 ATP6V0BQ99437 205 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 GAGE2DQ9UEU5 116 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 IGKV1D-13A0A0B4J2D9 117 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 IGKV1-13P0DP09 117 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 TEX43Q6ZNM6 134 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 DLEU1O43261 78 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 SH2D1AO60880 128 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 INSP01308 110 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 INAFM2P0DMQ5 153 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 UBE2V1Q13404 147 aa6.38□□□□□ -1.39
VPS13D-211ENST00000543710 TRAV8-6A0A0B4J262 113 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 SHISA9B4DS77 424 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 F8W1H4 67 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 PYGO2Q9BRQ0 406 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 SPRR3Q9UBC9 169 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 ESPL1Q14674 2120 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 GGTLC3B5MD39 225 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 RNF152Q8N8N0 203 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 SYS1-DBNDD2H3BUS1 97 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 H3BUT2 72 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 TDGF1P13385 188 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 IL15RAQ13261 267 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 HELZP42694 1942 aaKnown RBP6.37□□□□□ -1.39
VPS13D-211ENST00000543710 H3BMM0 161 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 BUB1B-PAK6H3BSN5 160 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 NHP2Q9NX24 153 aaKnown RBP6.37□□□□□ -1.39
VPS13D-211ENST00000543710 PGPEP1Q9NXJ5 209 aa6.37□□□□□ -1.39
VPS13D-211ENST00000543710 IGHV3-72A0A0B4J1Y9 119 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 TRAV8-2A0A0B4J237 113 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 H7C2G1 150 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 PLAUP00749 431 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 PRB4P10163 310 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-211ENST00000543710 MDKP21741 143 aaPredicted RBP6.36□□□□□ -1.39
VPS13D-211ENST00000543710 B3GALT5-AS1P59052 145 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 LGALS9BQ3B8N2 356 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 TEX36Q5VZQ5 186 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 LGALS9CQ6DKI2 356 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 ZNF114Q8NC26 417 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 OR13C6PQ8NH95 151 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 ATOH7Q8N100 152 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 CEP250Q9BV73 2442 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 VMO1Q7Z5L0 202 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 ZNRF1Q8ND25 227 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 SLX1AQ9BQ83 275 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 CABIN1Q9Y6J0 2220 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 MCM3APO60318 1980 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 ACYP1P07311 99 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 CTSBP07858 339 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 VWC2Q2TAL6 325 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 Q6ZSR3 168 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 MAPK1IP1LQ8NDC0 245 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 GLMPQ8WWB7 406 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 VOPP1Q96AW1 172 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 KLF12Q9Y4X4 402 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 MYO18AQ92614 2054 aaKnown RBP6.36□□□□□ -1.39
VPS13D-211ENST00000543710 TRBV6-1A0A0K0K1D8 114 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 MST1P26927 711 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 TDGF1P3P51864 188 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 FAM216BQ8N7L0 139 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 NUP35Q8NFH5 326 aa6.36□□□□□ -1.39
VPS13D-211ENST00000543710 RNASE7Q9H1E1 156 aaKnown RBP6.36□□□□□ -1.39
VPS13D-211ENST00000543710 NLRC5Q86WI3 1866 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 MLNRO43193 412 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 CD7P09564 240 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 C11orf52Q96A22 123 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 TMEM14BQ9NUH8 114 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 FSHBP01225 129 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 FOXF2Q12947 444 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 FOXE3Q13461 319 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 ZNF124Q15973 351 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 TMEM200BQ69YZ2 307 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 C20orf78Q9BR46 151 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 DOCK4Q8N1I0 1966 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 INAFM1C9JVW0 142 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 M0R381 172 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 SRSF3P84103 164 aaKnown RBP6.35□□□□□ -1.39
VPS13D-211ENST00000543710 FAM74A4Q5TZK3 123 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 MESP1Q9BRJ9 268 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 CHD5Q8TDI0 1954 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-211ENST00000543710 INSL3P51460 131 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 RPL36AP83881 106 aaKnown RBP6.35□□□□□ -1.39
VPS13D-211ENST00000543710 KRTAP27-1Q3LI81 207 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 KIAA1644Q3SXP7 199 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 PIP4P2Q8N4L2 257 aa6.35□□□□□ -1.39
VPS13D-211ENST00000543710 RPL36ALQ969Q0 106 aaKnown RBP6.35□□□□□ -1.39
VPS13D-211ENST00000543710 ICE1Q9Y2F5 2266 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 LYPD6BQ8NI32 183 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 LINC01619G3V211 115 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 ZNHIT1O43257 154 aa6.34□□□□□ -1.39
VPS13D-211ENST00000543710 CXCL1P09341 107 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms