RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 HERV-K104P61576 105 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 HSPE1P61604 102 aaKnown RBP3.18□□□□□ -1.9
LIMS1-214ENST00000542845 IZUMO4Q1ZYL8 232 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 SFXN4Q6P4A7 337 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 LYPD5Q6UWN5 251 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 GPR141Q7Z602 305 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 WFDC10BQ8IUB3 73 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 NANOGP1Q8N7R0 232 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 SLC35G3Q8N808 338 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 BEST4Q8NFU0 473 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 OR11H7Q8NGC8 314 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 OR51G1Q8NGK1 321 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 OR4X1Q8NH49 305 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 PPP1R14BQ96C90 147 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 GPR146Q96CH1 333 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 VSIG2Q96IQ7 327 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 CCDC90BQ9GZT6 254 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 TMPRSS5Q9H3S3 457 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 ENY2Q9NPA8 101 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 DNAH8Q96JB1 4490 aa3.18□□□□□ -1.9
LIMS1-214ENST00000542845 TRGV2A0A075B6R0 118 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 IGLV5-39A0A0G2JS06 123 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 ERICH4A6NGS2 130 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 SNURFLB1AK76 121 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 H3BNG1 76 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CORTO00230 105 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CASQ2O14958 399 aaPredicted RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CTDSPLO15194 276 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 SSX5O60225 188 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 ARL6IP5O75915 188 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 DUSP14O95147 198 aaKnown RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 IGLV2-11P01706 119 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CRYGDP07320 174 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 HSMCR30P0CW71 290 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 RD3LP0DJH9 198 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 RNASE2P10153 161 aaKnown RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 OR10J1P30954 320 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 ETV6P41212 452 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 RANBP1P43487 201 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CBX5P45973 191 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CNN1P51911 297 aaKnown RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 RND2P52198 227 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 TAS2R60P59551 318 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 RPS25P62851 125 aaKnown RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF415Q09FC8 603 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 ARL6IP1Q15041 203 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 MSMO1Q15800 293 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 LBHQ53QV2 105 aaPredicted RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 AMTNQ6UX39 209 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 TMEM91Q6ZNR0 172 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 AHSA2Q719I0 299 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CROCCP3Q8IVE0 287 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CCDC197Q8NCU1 140 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 OR1S2Q8NGQ3 325 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 OR52I2Q8NH67 350 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 CYGBQ8WWM9 190 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 RBPMSQ93062 196 aaKnown RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 ACY3Q96HD9 319 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 PDCD10Q9BUL8 212 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 RBM38Q9H0Z9 239 aaKnown RBP3.17□□□□□ -1.9
LIMS1-214ENST00000542845 DAPK2Q9UIK4 370 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 ICOSQ9Y6W8 199 aa3.17□□□□□ -1.9
LIMS1-214ENST00000542845 MEIS3P1A6NDR6 274 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 ISLRO14498 428 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 PRAF2O60831 178 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 CCNKO75909 580 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 IGHV3-53P01767 116 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 IGLC1P0CG04 106 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 PSG1P11464 419 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 YPEL3P61236 119 aaPredicted RBP3.16□□□□□ -1.9
LIMS1-214ENST00000542845 HIST1H1AQ02539 215 aaPredicted RBP3.16□□□□□ -1.9
LIMS1-214ENST00000542845 FGL1Q08830 312 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE2BQ13066 116 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 GAMTQ14353 236 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE2EQ4V326 116 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 PHLDA2Q53GA4 152 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 IDNKQ5T6J7 187 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 LELP1Q5T871 98 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 PXDC1Q5TGL8 231 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE2AQ6NT46 116 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF493Q6ZR52 646 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 Q6ZSA8 131 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 Q6ZTI0 123 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 OR8I2Q8N0Y5 310 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 RNF182Q8N6D2 247 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 MPLKIPQ8TAP9 179 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 THAP6Q8TBB0 222 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 CIRBP-AS1Q8TBR5 109 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 TMEM263Q8WUH6 116 aaKnown RBP3.16□□□□□ -1.9
LIMS1-214ENST00000542845 MRGPRFQ96AM1 343 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 LINC00467Q9BRT7 94 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 RSG1Q9BU20 258 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 C9orf16Q9BUW7 83 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 CHAC1Q9BUX1 264 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE2DQ9UEU5 116 aa3.16□□□□□ -1.9
LIMS1-214ENST00000542845 RCL1Q9Y2P8 373 aaKnown RBP3.16□□□□□ -1.9
LIMS1-214ENST00000542845 RRP15Q9Y3B9 282 aaKnown RBP3.16□□□□□ -1.9
LIMS1-214ENST00000542845 RBFOX3A6NFN3 312 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 E5RGE8 158 aa3.15□□□□□ -1.91
LIMS1-214ENST00000542845 BOLA2-SMG1P6H3BVE0 249 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms