RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 SNRPD3P62318 126 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 RHOBP62745 196 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 EIF5AL1Q6IS14 154 aaKnown RBP13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 OR11H4Q8NGC9 324 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 WFDC1Q9HC57 220 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 CLEC5AQ9NY25 188 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 DOK5Q9P104 306 aa13.17□□□□□ -0.3
CLSTN3-210ENST00000540931 ATF4P18848 351 aaPredicted RBP13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 CXCL2P19875 107 aa13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 M6PRP20645 277 aa13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 GUK1Q16774 197 aa13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 FFAR4Q5NUL3 377 aa13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 TMEM37Q8WXS4 190 aa13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 MS4A6AQ9H2W1 248 aa13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 SLC25A22Q9H936 323 aa13.16□□□□□ -0.3
CLSTN3-210ENST00000540931 IGHV3-66A0A0C4DH42 116 aa13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 A0A1W2PPV4 95 aa13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 EDN2P20800 178 aa13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 KRTAP10-11P60412 298 aa13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 RPL7L1Q6DKI1 246 aaKnown RBP13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 PATE2Q6UY27 113 aa13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 HSD17B11Q8NBQ5 300 aa13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 RSG1Q9BU20 258 aa13.15□□□□□ -0.3
CLSTN3-210ENST00000540931 ATP6V0CP27449 155 aa13.14□□□□□ -0.31
CLSTN3-210ENST00000540931 CD81P60033 236 aa13.14□□□□□ -0.31
CLSTN3-210ENST00000540931 FAM78BQ5VT40 261 aa13.14□□□□□ -0.31
CLSTN3-210ENST00000540931 TMUB2Q71RG4 321 aa13.14□□□□□ -0.31
CLSTN3-210ENST00000540931 AURKAIP1Q9NWT8 199 aaPredicted RBP13.14□□□□□ -0.31
CLSTN3-210ENST00000540931 TMEM14CQ9P0S9 112 aa13.14□□□□□ -0.31
CLSTN3-210ENST00000540931 SMAD5-AS1Q9Y6J3 95 aa13.14□□□□□ -0.31
CLSTN3-210ENST00000540931 A0A087X0K7 114 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 A0A1B0GVG6 124 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 IZUMO1RA6ND01 250 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 A8MZ25 164 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 OR11H12B2RN74 326 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 ISLRO14498 428 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 TPT1P13693 172 aaKnown RBP13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 UHRF2Q96PU4 802 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 ZNF471Q9BX82 626 aaPredicted RBP13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 FUT9Q9Y231 359 aa13.13□□□□□ -0.31
CLSTN3-210ENST00000540931 UMAD1C9J7I0 102 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 K7EQG2 157 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 SEC11BP0C7V7 166 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 PSMB3P49720 205 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 KHDC3LQ587J8 217 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 LCN15Q6UWW0 184 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 LRRC20Q8TCA0 184 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 DCANP1Q8TF63 244 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 SLC50A1Q9BRV3 221 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 SCRT1Q9BWW7 348 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 SLC25A32Q9H2D1 315 aa13.12□□□□□ -0.31
CLSTN3-210ENST00000540931 ZNF253O75346 499 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 PDE6HQ13956 83 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 AKR1C8PQ5T2L2 129 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 PQLC2Q6ZP29 291 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 SLC51BQ86UW2 128 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 BAP18Q8IXM2 172 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 OR10G4Q8NGN3 311 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 OR10G9Q8NGN4 311 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 OR10G7Q8NGN6 311 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 STOML3Q8TAV4 291 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 PRR25Q96S07 402 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 HRH4Q9H3N8 390 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 CYTL1Q9NRR1 136 aa13.11□□□□□ -0.31
CLSTN3-210ENST00000540931 IGKV3-7A0A075B6H7 116 aa13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 SPP1P10451 314 aa13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 LGALSLQ3ZCW2 172 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 TMEM41BQ5BJD5 291 aa13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 SPATA31B1PQ5VZV4 182 aa13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 GBGT1Q8N5D6 347 aa13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 ACTR3CQ9C0K3 210 aaPredicted RBP13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 TUBA4BQ9H853 241 aa13.1□□□□□ -0.31
CLSTN3-210ENST00000540931 NBEAL2Q6ZNJ1 2754 aa13.09□□□□□ -0.31
CLSTN3-210ENST00000540931 HIST1H1EP10412 219 aaKnown RBP13.09□□□□□ -0.31
CLSTN3-210ENST00000540931 RAB5CP51148 216 aa13.09□□□□□ -0.31
CLSTN3-210ENST00000540931 DPPA3Q6W0C5 159 aa13.09□□□□□ -0.31
CLSTN3-210ENST00000540931 WFDC3Q8IUB2 231 aa13.09□□□□□ -0.31
CLSTN3-210ENST00000540931 C16orf92Q96LL3 132 aa13.09□□□□□ -0.31
CLSTN3-210ENST00000540931 TFPI2P48307 235 aa13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 CDC34P49427 236 aaPredicted RBP13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 PSG9Q00887 426 aa13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 LEMD1Q68G75 181 aa13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 Q8N1Y9 231 aa13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 MRAPQ8TCY5 172 aa13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 OR51M1Q9H341 326 aa13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 RPRMQ9NS64 109 aa13.08□□□□□ -0.32
CLSTN3-210ENST00000540931 CD7P09564 240 aa13.07□□□□□ -0.32
CLSTN3-210ENST00000540931 DEFB121Q5J5C9 76 aa13.07□□□□□ -0.32
CLSTN3-210ENST00000540931 LYPD1Q8N2G4 141 aa13.07□□□□□ -0.32
CLSTN3-210ENST00000540931 PAXXQ9BUH6 204 aa13.07□□□□□ -0.32
CLSTN3-210ENST00000540931 MRPS12O15235 138 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-210ENST00000540931 OR7C2O60412 319 aa13.06□□□□□ -0.32
CLSTN3-210ENST00000540931 IGLC2P0DOY2 106 aa13.06□□□□□ -0.32
CLSTN3-210ENST00000540931 GCSAMLQ5JQS6 135 aa13.06□□□□□ -0.32
CLSTN3-210ENST00000540931 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.06□□□□□ -0.32
CLSTN3-210ENST00000540931 MAP6D1Q9H9H5 199 aa13.06□□□□□ -0.32
CLSTN3-210ENST00000540931 PRELID1Q9Y255 219 aa13.06□□□□□ -0.32
CLSTN3-210ENST00000540931 K7EIL1 84 aa13.05□□□□□ -0.32
CLSTN3-210ENST00000540931 ODF3L2Q3SX64 289 aa13.05□□□□□ -0.32
CLSTN3-210ENST00000540931 MIR17HGQ75NE6 70 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms