RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ID1P41134 155 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 GALR1P47211 349 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 VAMP2P63027 116 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 PXDC1Q5TGL8 231 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 FOXI2Q6ZQN5 318 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 TMEM217Q8N7C4 229 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 C20orf173Q96LM9 149 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 RSG1Q9BU20 258 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 SLC25A22Q9H936 323 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 GPN1Q9HCN4 374 aaPredicted RBP10.3□□□□□ -0.76
USP28-209ENST00000540925 DOK5Q9P104 306 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 KMT2AQ03164 3969 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 TRAV8-2A0A0B4J237 113 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 S100A7P31151 101 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 SULT1A1P50225 295 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 CAV2P51636 162 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 ZNF546Q86UE3 836 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 TMEM252Q8N6L7 170 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 ZNF709Q8N972 641 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 UHRF2Q96PU4 802 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 NMES1Q9C002 83 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 WDR83OSQ9Y284 106 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 DNAH6Q9C0G6 4158 aa10.29□□□□□ -0.76
USP28-209ENST00000540925 A0A087X0K7 114 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 A0A0J9YX75 114 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 SIX6O95475 246 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 RBMY1A1P0DJD3 496 aaKnown RBP10.28□□□□□ -0.76
USP28-209ENST00000540925 RBMY1CP0DJD4 496 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 PVALBP20472 110 aaPredicted RBP10.28□□□□□ -0.76
USP28-209ENST00000540925 S100A10P60903 97 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 RAP2BP61225 183 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 PRR20EP86478 221 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 PRR20CP86479 221 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 PRR20DP86480 221 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 PRR20BP86481 221 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 PRR20AP86496 221 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 RBMY1FQ15415 496 aaKnown RBP10.28□□□□□ -0.76
USP28-209ENST00000540925 SPATA31B1PQ5VZV4 182 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 CHAC2Q8WUX2 184 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 TMEM37Q8WXS4 190 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 LINC00052Q96N35 136 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 ARL6Q9H0F7 186 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 ARV1Q9H2C2 271 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 UQCC1Q9NVA1 299 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 CLEC5AQ9NY25 188 aa10.28□□□□□ -0.76
USP28-209ENST00000540925 H0YIZ8 118 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 GOSR2O14653 212 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 MIFP14174 115 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 RPL7P18124 248 aaKnown RBP10.27□□□□□ -0.77
USP28-209ENST00000540925 S100A11P31949 105 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 BCAP31P51572 246 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 H2BFSP57053 126 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 DEFA1P59665 94 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 DEFA3P59666 94 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 CEMP1Q6PRD7 247 aaPredicted RBP10.27□□□□□ -0.77
USP28-209ENST00000540925 C16orf92Q96LL3 132 aa10.27□□□□□ -0.77
USP28-209ENST00000540925 IGHV4-28A0A0C4DH34 117 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 NUPR2A6NF83 97 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 F6UB75 175 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 OR5G3P0C626 314 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 CAMLGP49069 296 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 NUTF2P61970 127 aaKnown RBP10.26□□□□□ -0.77
USP28-209ENST00000540925 PMS2P11Q13670 270 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 MORN5Q5VZ52 161 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 AMTNQ6UX39 209 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 ZNF705AQ6ZN79 300 aaPredicted RBP10.26□□□□□ -0.77
USP28-209ENST00000540925 C1QTNF4Q9BXJ3 329 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 HRH4Q9H3N8 390 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 RPRMQ9NS64 109 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 OR5AC2Q9NZP5 309 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 XCL2Q9UBD3 114 aa10.26□□□□□ -0.77
USP28-209ENST00000540925 CXorf65A6NEN9 183 aa10.25□□□□□ -0.77
USP28-209ENST00000540925 ZNF705FA8MVS1 300 aaPredicted RBP10.25□□□□□ -0.77
USP28-209ENST00000540925 DEFB4AO15263 64 aa10.25□□□□□ -0.77
USP28-209ENST00000540925 ZNF705DP0CH99 300 aaPredicted RBP10.25□□□□□ -0.77
USP28-209ENST00000540925 ZNF705BP0CI00 300 aaPredicted RBP10.25□□□□□ -0.77
USP28-209ENST00000540925 OPCMLQ14982 345 aa10.25□□□□□ -0.77
USP28-209ENST00000540925 FAM78BQ5VT40 261 aa10.25□□□□□ -0.77
USP28-209ENST00000540925 LINC00305Q7Z4B0 112 aa10.25□□□□□ -0.77
USP28-209ENST00000540925 S100A7AQ86SG5 101 aa10.25□□□□□ -0.77
USP28-209ENST00000540925 STX12Q86Y82 276 aa10.25□□□□□ -0.77
USP28-209ENST00000540925 ELOA3CA0A087WX78 387 aaPredicted RBP10.24□□□□□ -0.77
USP28-209ENST00000540925 RPL29P47914 159 aaKnown RBP10.24□□□□□ -0.77
USP28-209ENST00000540925 NANOS2P60321 138 aaKnown RBP10.24□□□□□ -0.77
USP28-209ENST00000540925 HBG1P69891 147 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 HBG2P69892 147 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 ATP6V1FQ16864 119 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 MIC13Q5XKP0 118 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 IGFL4Q6B9Z1 124 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 RNF182Q8N6D2 247 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 C11orf45Q8TAV5 145 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 PHLDA1Q8WV24 401 aaPredicted RBP10.24□□□□□ -0.77
USP28-209ENST00000540925 NEU1Q99519 415 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 SLC35B3Q9H1N7 401 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 RNF24Q9Y225 148 aa10.24□□□□□ -0.77
USP28-209ENST00000540925 UBE2L5PA0A1B0GUS4 154 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 E5RGE8 158 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 IGKV3-20P01619 116 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 CXCL2P19875 107 aa10.23□□□□□ -0.77
USP28-209ENST00000540925 CXCL3P19876 107 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms