RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 RSPO1Q2MKA7 263 aaPredicted RBP11.44□□□□□ -0.58
COLCA1-204ENST00000540738 ZNF581Q9P0T4 197 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 TCTEX1D4Q5JR98 221 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 SEM1Q6ZVN7 128 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 ZNRD1Q9P1U0 126 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 MUC21A0A0G2JKD1 596 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 MUC21A0A140T8X8 626 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 C1orf194Q5T5A4 169 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 SELENOKQ9Y6D0 94 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 PDE6HQ13956 83 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 PMCHL1Q16048 86 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 LY6G6FQ5SQ64 297 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 OR11H6Q8NGC7 330 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 TRAV5A0A0B4J249 113 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 IZUMO1RA6ND01 250 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 LINC01549A6NIU2 74 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 PSCAO43653 123 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 KIAA2026Q5HYC2 2103 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 IGKV2-40A0A087WW87 121 aaPredicted RBP11.43□□□□□ -0.58
COLCA1-204ENST00000540738 IGKV2D-40P01614 121 aaPredicted RBP11.43□□□□□ -0.58
COLCA1-204ENST00000540738 SRP19P09132 144 aaKnown RBP11.43□□□□□ -0.58
COLCA1-204ENST00000540738 MDKP21741 143 aaPredicted RBP11.43□□□□□ -0.58
COLCA1-204ENST00000540738 TMEM170BQ5T4T1 132 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 NRGNQ92686 78 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 C12orf57Q99622 126 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 TRAV12-3A0A0B4J271 114 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 FOLR2P14207 255 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 ERASQ7Z444 233 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 OSTCQ9NRP0 149 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 NDUFA4L2Q9NRX3 87 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 CTSZQ9UBR2 303 aa11.43□□□□□ -0.58
COLCA1-204ENST00000540738 MGST2Q99735 147 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 SHANK2-AS3Q9BTD1 123 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 MALRD1Q5VYJ5 2156 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 ADAMTS9Q9P2N4 1935 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 C15orf65H3BRN8 121 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 CNTFRP26992 372 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 KIAA1644Q3SXP7 199 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 TMEM14BQ9NUH8 114 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 HIGD1CA8MV81 97 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 C5orf24Q7Z6I8 188 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 MBD3L1Q8WWY6 194 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 TOMM7Q9P0U1 55 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 C9orf66Q5T8R8 295 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 HEATR5AQ86XA9 2040 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 HSPB9Q9BQS6 159 aa11.42□□□□□ -0.58
COLCA1-204ENST00000540738 IGKV1-6A0A0C4DH72 117 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 HIVEP2P31629 2446 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 ABCA1O95477 2261 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 H3BVH4 76 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 LINC00205P59089 165 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 H0YIZ8 118 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 SLC17A3O00476 420 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 VCX2Q9H322 139 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 C15orf62A8K5M9 175 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 IGLV3-1P01715 115 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 TRGC2P03986 189 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 FOXA3P55318 350 aaPredicted RBP11.41□□□□□ -0.58
COLCA1-204ENST00000540738 DAD1P61803 113 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 GCSAMLQ5JQS6 135 aa11.41□□□□□ -0.58
COLCA1-204ENST00000540738 PUSL1Q8N0Z8 303 aaKnown RBP11.41□□□□□ -0.58
COLCA1-204ENST00000540738 TCRAP04437 139 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 LOXL1Q08397 574 aaPredicted RBP11.4□□□□□ -0.58
COLCA1-204ENST00000540738 PET117Q6UWS5 81 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 ADARB2-AS1A8MUL3 147 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 EXOC3-AS1Q8N2X6 119 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 MRAP2Q96G30 205 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 FXYD7P58549 80 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 OR11H2Q8NH07 326 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 FOXE3Q13461 319 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 SPATA31B1PQ5VZV4 182 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 GTF2H5Q6ZYL4 71 aa11.4□□□□□ -0.58
COLCA1-204ENST00000540738 NCOR2Q9Y618 2525 aa11.4□□□□□ -0.59
COLCA1-204ENST00000540738 MED13LQ71F56 2210 aa11.4□□□□□ -0.59
COLCA1-204ENST00000540738 C7orf71A4D174 169 aa11.4□□□□□ -0.59
COLCA1-204ENST00000540738 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.39□□□□□ -0.59
COLCA1-204ENST00000540738 JOSD1Q15040 202 aaPredicted RBP11.39□□□□□ -0.59
COLCA1-204ENST00000540738 DEFB130BP0DP73 79 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 DEFB130AP0DP74 79 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 CCL24O00175 119 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 LHBP01229 141 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 APOHP02749 345 aaPredicted RBP11.39□□□□□ -0.59
COLCA1-204ENST00000540738 ZNF414Q96IQ9 312 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 CYSLTR1Q9Y271 337 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 CENPVL3A0A0U1RRI6 287 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 ORMDL2Q53FV1 153 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 OR13C6PQ8NH95 151 aa11.39□□□□□ -0.59
COLCA1-204ENST00000540738 LRRK1Q38SD2 2015 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 TGIF2-C20orf24A0A0A6YYL0 155 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 HOXA5P20719 270 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 SEPSECSQ9HD40 501 aaKnown RBP11.38□□□□□ -0.59
COLCA1-204ENST00000540738 ANKHD1Q8IWZ3 2542 aaKnown RBP11.38□□□□□ -0.59
COLCA1-204ENST00000540738 YLPM1P49750 1951 aaKnown RBP11.38□□□□□ -0.59
COLCA1-204ENST00000540738 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.38□□□□□ -0.59
COLCA1-204ENST00000540738 LGALS1P09382 135 aaKnown RBP11.38□□□□□ -0.59
COLCA1-204ENST00000540738 CBLN1P23435 193 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 PKIAP61925 76 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 NXT2Q9NPJ8 142 aaKnown RBP11.38□□□□□ -0.59
COLCA1-204ENST00000540738 IGHV4-38-2P0DP08 117 aa11.38□□□□□ -0.59
COLCA1-204ENST00000540738 FAM90A2PQ658T7 463 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms