RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 OOSP1A8MZH6 123 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 UCNP55089 124 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 CHCHD5Q9BSY4 110 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 C7orf69Q9H7B7 122 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 RAXQ9Y2V3 346 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 SEC16AO15027 2179 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 A0A1B0GX51 115 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 M0R135 149 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 IGHG3P01860 377 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 TBC1D28Q2M2D7 210 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 MOB3BQ86TA1 216 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 PRSS3P2Q8NHM4 247 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 BAALCQ8WXS3 180 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 TMEM158Q8WZ71 300 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 ST8SIA1Q92185 356 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 ZNF799Q96GE5 643 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 HS3ST6Q96QI5 342 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 PLEKHA3Q9HB20 300 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 SLC25A10Q9UBX3 287 aaPredicted RBP7.6□□□□□ -1.19
CLIP1-214ENST00000540539 FZR1Q9UM11 496 aa7.6□□□□□ -1.19
CLIP1-214ENST00000540539 MED12Q93074 2177 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 CNTRLQ7Z7A1 2325 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 TRAV8-2A0A0B4J237 113 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.59□□□□□ -1.19
CLIP1-214ENST00000540539 NDUFA7O95182 113 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 EMP1P54849 157 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 ZNF816Q0VGE8 651 aaPredicted RBP7.59□□□□□ -1.19
CLIP1-214ENST00000540539 SFTA2Q6UW10 78 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 MRAPQ8TCY5 172 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 RND1Q92730 232 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 PROCRQ9UNN8 238 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 CFAP54Q96N23 3096 aa7.59□□□□□ -1.19
CLIP1-214ENST00000540539 A8MWV9 139 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 WISP2O76076 250 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 IGLC6P0CF74 106 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 ZFP2Q6ZN57 461 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 SBSPONQ8IVN8 264 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 DRAM1Q8N682 238 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 CFHR4Q92496 578 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 PRRG4Q9BZD6 226 aa7.59□□□□□ -1.2
CLIP1-214ENST00000540539 A0A0J9YW62 118 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A5PA8MXJ8 464 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 NTN3O00634 580 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-214ENST00000540539 FBXW4P57775 412 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 HERVK_113P63121 156 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 TAL2Q16559 108 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 DEFB110Q30KQ9 67 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 HHLA3Q9XRX5 114 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 KLK5Q9Y337 293 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-214ENST00000540539 TRAV8-1A0A0A6YYK1 113 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 IGHV5-10-1A0A0J9YXX1 117 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 PRSS46E5RG02 174 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 DUSP14O95147 198 aaKnown RBP7.58□□□□□ -1.2
CLIP1-214ENST00000540539 IL4P05112 153 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 IFI27P40305 119 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-214ENST00000540539 FXYD7P58549 80 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 IGLV3-21P80748 117 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-214ENST00000540539 KRTAP27-1Q3LI81 207 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 IFI27L1Q96BM0 104 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 ODF3Q96PU9 254 aa7.58□□□□□ -1.2
CLIP1-214ENST00000540539 RPP21Q9H633 154 aaKnown RBP7.58□□□□□ -1.2
CLIP1-214ENST00000540539 ORM2P19652 201 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FCER1GP30273 86 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 ZC2HC1BQ5TFG8 222 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 C15orf53Q8NAA6 179 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 DEFB124Q8NES8 71 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 RITA1Q96K30 269 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 HIST1H4GQ99525 98 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 OR2H1Q9GZK4 316 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 ADAMTS20P59510 1910 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 LOC107984156A0A0G2JMH3 177 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 WI2-2373I1.2A0A1W2PRP0 233 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A10PA6NDY2 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A20PA6NIJ5 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A7PA6NKC0 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A22PA8MWA6 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A12PA8MX19 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A23PA8MXZ1 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A15PP0C7V4 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A13PP0C7W8 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A14PP0C7W9 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 FAM90A24PP0C7X0 464 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 OR1C1Q15619 314 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 ARL17AQ8IVW1 177 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 RFESDQ8TAC1 157 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 COQ2Q96H96 371 aa7.57□□□□□ -1.2
CLIP1-214ENST00000540539 KLF13Q9Y2Y9 288 aaPredicted RBP7.57□□□□□ -1.2
CLIP1-214ENST00000540539 COL27A1Q8IZC6 1860 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-214ENST00000540539 TRBV7-3A0A075B6L6 115 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 H3BVH4 76 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 KLF17Q5JT82 389 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-214ENST00000540539 C9orf153Q5TBE3 101 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 RHBDD2Q6NTF9 364 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 LINC00322Q6ZN03 302 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-214ENST00000540539 GJC3Q8NFK1 279 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 UBALD1Q8TB05 177 aa7.56□□□□□ -1.2
CLIP1-214ENST00000540539 AMMECR1Q9Y4X0 333 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-214ENST00000540539 MBD3L4A6NDZ8 208 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-214ENST00000540539 MBD3L3A6NE82 208 aaPredicted RBP7.56□□□□□ -1.2
CLIP1-214ENST00000540539 MBD3L5A6NJ08 208 aaPredicted RBP7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms