RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 C1orf185Q5T7R7 199 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 GFRALQ6UXV0 394 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 DDB2Q92466 427 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 KLK15Q9H2R5 256 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 MRPL36Q9P0J6 103 aaKnown RBP10.45□□□□□ -0.74
MSH6-210ENST00000540021 CD59P13987 128 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 BVES-AS1Q5T3Y7 98 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 ZNF474Q6S9Z5 364 aaPredicted RBP10.45□□□□□ -0.74
MSH6-210ENST00000540021 LYPD2Q6UXB3 125 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 PATE2Q6UY27 113 aa10.45□□□□□ -0.74
MSH6-210ENST00000540021 TRAV8-6A0A0B4J262 113 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 CTRLP40313 264 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 LGALS7P47929 136 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 PRSS57Q6UWY2 283 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 C1orf159Q96HA4 380 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 FAM167A-AS1Q96KT0 104 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 PSG8Q9UQ74 426 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.44□□□□□ -0.744e-7■■□□□ 11.5
MSH6-210ENST00000540021 ZNF788Q6ZQV5 615 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 IGFL4Q6B9Z1 124 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 TMEM167AQ8TBQ9 72 aa10.44□□□□□ -0.74
MSH6-210ENST00000540021 SOX21Q9Y651 276 aaPredicted RBP10.44□□□□□ -0.74
MSH6-210ENST00000540021 IGHV3-49A0A0A0MS15 119 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 FAM231BA6NCW3 169 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 BSPH1Q075Z2 132 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 AMN1Q8IY45 258 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 IGHV3-66A0A0C4DH42 116 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 C17orf100A8MU93 164 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 FNDC10F2Z333 226 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 ARL6IP6Q8N6S5 226 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 SLC25A39Q9BZJ4 359 aaPredicted RBP10.43□□□□□ -0.74
MSH6-210ENST00000540021 EVI2AP22794 236 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 FAM231DQ6ZW35 169 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 OR5AN1Q8NGI8 311 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 C8orf46Q8TAG6 207 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 OTORQ9NRC9 128 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 TMEM160Q9NX00 188 aa10.43□□□□□ -0.74
MSH6-210ENST00000540021 IGKV3-7A0A075B6H7 116 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 IGHV2-70DA0A0C4DH43 119 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 CLEC3BP05452 202 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 SP9P0CG40 484 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 PPP1R27Q86WC6 154 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 ORMDL3Q8N138 153 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 OR2K2Q8NGT1 345 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 COL25A1Q9BXS0 654 aaPredicted RBP10.42□□□□□ -0.74
MSH6-210ENST00000540021 TNRC6AQ8NDV7 1962 aaKnown RBP10.42□□□□□ -0.74
MSH6-210ENST00000540021 COL4A2P08572 1712 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 TMEM213A2RRL7 107 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 NPIPB5A8MRT5 1133 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 TOMM40O96008 361 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 Q86TA4 180 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 Q8TAT8 98 aa10.42□□□□□ -0.74
MSH6-210ENST00000540021 C2orf70A6NJV1 201 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 J3QR89 54 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 ITGB1BP1O14713 200 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 FTH1P19P0C7X4 201 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 LYZL1Q6UWQ5 148 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 LINC00322Q6ZN03 302 aaPredicted RBP10.41□□□□□ -0.74
MSH6-210ENST00000540021 Q8N976 141 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 GTSF1Q8WW33 167 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 TMEM133Q9H2Q1 129 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 C17orf77Q96MU5 243 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 IGKV2-40A0A087WW87 121 aaPredicted RBP10.41□□□□□ -0.74
MSH6-210ENST00000540021 FAM90A27PA6NNH2 459 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 IGKV2D-40P01614 121 aaPredicted RBP10.41□□□□□ -0.74
MSH6-210ENST00000540021 SFTA2Q6UW10 78 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 IGFBPL1Q8WX77 278 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 SMIM12Q96EX1 92 aa10.41□□□□□ -0.74
MSH6-210ENST00000540021 TECTAO75443 2155 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 CD5LO43866 347 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 S100A4P26447 101 aaKnown RBP10.4□□□□□ -0.74
MSH6-210ENST00000540021 OR4A5Q8NH83 315 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 NHP2Q9NX24 153 aaKnown RBP10.4□□□□□ -0.74
MSH6-210ENST00000540021 TET2Q6N021 2002 aaPredicted RBP10.4□□□□□ -0.74
MSH6-210ENST00000540021 A0A0G2JLM5 398 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 MEF2CQ06413 473 aaPredicted RBP10.4□□□□□ -0.74
MSH6-210ENST00000540021 KIR3DS1Q14943 382 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 RITA1Q96K30 269 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 PPIAL4CA0A0B4J2A2 164 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 SAP30O75446 220 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 PPIAL4GP0DN37 164 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 IFI27L1Q96BM0 104 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 FOXC2Q99958 501 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 MS4A6AQ9H2W1 248 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 MAP1LC3AQ9H492 121 aa10.4□□□□□ -0.74
MSH6-210ENST00000540021 IGLV1-44P01699 117 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 ECSCRQ19T08 205 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 MUC3AQ02505 3323 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 ZNF207O43670 478 aaKnown RBP10.39□□□□□ -0.75
MSH6-210ENST00000540021 IGHG3P01860 377 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 RNF125Q96EQ8 232 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 TAX1BP3O14907 124 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 SMIM13P0DJ93 91 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 ASCL5Q7RTU5 278 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 JKAMPQ9P055 326 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 SPG11Q96JI7 2443 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 C22orf46C9J442 243 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 HBDP02042 147 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 ZNF883P0CG24 379 aa10.39□□□□□ -0.75
MSH6-210ENST00000540021 CDKN1BP46527 198 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms