RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 SLC45A2Q9UMX9 530 aa8.34□□□□□ -1.07
VCAN-212ENST00000515397 HIGD1AQ9Y241 93 aa8.34□□□□□ -1.07
VCAN-212ENST00000515397 X6R8D5 127 aa8.34□□□□□ -1.07
VCAN-212ENST00000515397 IGHV3OR16-12A0A075B7B8 117 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 TRAV8-2A0A0B4J237 113 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 IGSF23A1L1A6 192 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 AGPAT2O15120 278 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 HLA-DRB4P13762 266 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 RAP2BP61225 183 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 FAM78BQ5VT40 261 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 MORN3Q6PF18 240 aaPredicted RBP8.33□□□□□ -1.08
VCAN-212ENST00000515397 CEMP1Q6PRD7 247 aaPredicted RBP8.33□□□□□ -1.08
VCAN-212ENST00000515397 Q8NAQ8 132 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 C11orf45Q8TAV5 145 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 PHLDA1Q8WV24 401 aaPredicted RBP8.33□□□□□ -1.08
VCAN-212ENST00000515397 SHANK2-AS3Q9BTD1 123 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 SLC35B3Q9H1N7 401 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 SAV1Q9H4B6 383 aaPredicted RBP8.33□□□□□ -1.08
VCAN-212ENST00000515397 HLA-DRB4X5D2U9 266 aa8.33□□□□□ -1.08
VCAN-212ENST00000515397 ELOA3CA0A087WX78 387 aaPredicted RBP8.32□□□□□ -1.08
VCAN-212ENST00000515397 H3BTX0 84 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 ISLRO14498 428 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 PSMB3P49720 205 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 SELENOTP62341 195 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 LRRC37A5PQ49AS3 106 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 MORN5Q5VZ52 161 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 MIC13Q5XKP0 118 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 ZNF767PQ75MW2 155 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 ARV1Q9H2C2 271 aa8.32□□□□□ -1.08
VCAN-212ENST00000515397 SEPSECSQ9HD40 501 aaKnown RBP8.32□□□□□ -1.08
VCAN-212ENST00000515397 DNAH1Q9P2D7 4330 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 TRAV5A0A0B4J249 113 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 JTBO76095 146 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 ATF4P18848 351 aaPredicted RBP8.31□□□□□ -1.08
VCAN-212ENST00000515397 PVALBP20472 110 aaPredicted RBP8.31□□□□□ -1.08
VCAN-212ENST00000515397 CAMLGP49069 296 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 PLP1P60201 277 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 NHLH2Q02577 135 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 EBLN2Q6P2I7 272 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 FOXI2Q6ZQN5 318 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 TMEM252Q8N6L7 170 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 GPN1Q9HCN4 374 aaPredicted RBP8.31□□□□□ -1.08
VCAN-212ENST00000515397 OR5AC2Q9NZP5 309 aa8.31□□□□□ -1.08
VCAN-212ENST00000515397 A0A0J9YX75 114 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 UBE2L5PA0A1B0GUS4 154 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 ZNF705EA8MWA4 302 aaPredicted RBP8.3□□□□□ -1.08
VCAN-212ENST00000515397 FNDC10F2Z333 226 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 H0YIZ8 118 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 COX7A2P2O60397 106 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 LY6G6CO95867 125 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 PRM2P04554 102 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 SULT1A1P50225 295 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 EMP1P54849 157 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 NUTF2P61970 127 aaKnown RBP8.3□□□□□ -1.08
VCAN-212ENST00000515397 LINC00305Q7Z4B0 112 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 ZNF709Q8N972 641 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 LRRC20Q8TCA0 184 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 TMEM37Q8WXS4 190 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 GGACTQ9BVM4 153 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 C11orf68Q9H3H3 251 aaKnown RBP8.3□□□□□ -1.08
VCAN-212ENST00000515397 BATF3Q9NR55 127 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 RPRMQ9NS64 109 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 LYRM2Q9NU23 88 aaPredicted RBP8.3□□□□□ -1.08
VCAN-212ENST00000515397 UQCC1Q9NVA1 299 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 CELA1Q9UNI1 258 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 HYDINQ4G0P3 5121 aa8.3□□□□□ -1.08
VCAN-212ENST00000515397 NUPR2A6NF83 97 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 ZNF705FA8MVS1 300 aaPredicted RBP8.29□□□□□ -1.08
VCAN-212ENST00000515397 MRPS12O15235 138 aaKnown RBP8.29□□□□□ -1.08
VCAN-212ENST00000515397 SSNA1O43805 119 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 RPL7P18124 248 aaKnown RBP8.29□□□□□ -1.08
VCAN-212ENST00000515397 MEOX2P50222 304 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 PSG9Q00887 426 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 BAXQ07812 192 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 TMEM41BQ5BJD5 291 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 ZNF546Q86UE3 836 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 ZNF738Q8NE65 137 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 GPR82Q96P67 336 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 MARVELD1Q9BSK0 173 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 PLA2G2EQ9NZK7 142 aa8.29□□□□□ -1.08
VCAN-212ENST00000515397 ALMS1Q8TCU4 4167 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 M0R2Z0 102 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 MIFP14174 115 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 FGF7P21781 194 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 S100A11P31949 105 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 CNN1P51911 297 aaKnown RBP8.28□□□□□ -1.08
VCAN-212ENST00000515397 H2BFSP57053 126 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 CLINT1Q14677 625 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 OPCMLQ14982 345 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 GCSAMLQ5JQS6 135 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 C10orf113Q5VZT2 155 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 Q6ZTC4 211 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 STX12Q86Y82 276 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 THAP6Q8TBB0 222 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 C1QTNF4Q9BXJ3 329 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 MFFQ9GZY8 342 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 DNAJC4Q9NNZ3 241 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 WDR83OSQ9Y284 106 aa8.28□□□□□ -1.08
VCAN-212ENST00000515397 KLK5Q9Y337 293 aaPredicted RBP8.28□□□□□ -1.08
VCAN-212ENST00000515397 H3BQ15 152 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms