RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 RPUSD4Q96CM3 377 aaKnown RBP6.29□□□□□ -1.4
SCN1A-207ENST00000507401 ABHD14AQ9BUJ0 271 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 CSTL1Q9H114 145 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 PARLQ9H300 379 aa6.29□□□□□ -1.4
SCN1A-207ENST00000507401 IGHV3-72A0A0B4J1Y9 119 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 DIRC3C9JPN6 131 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 CCL25O15444 150 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 MPDU1O75352 247 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 TUSC2O75896 110 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 ELANEP08246 267 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 IGLL1P15814 213 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 FOXE3Q13461 319 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 PSG3Q16557 428 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 MRPL54Q6P161 138 aaKnown RBP6.28□□□□□ -1.4
SCN1A-207ENST00000507401 Q6ZN92 141 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 Q6ZPA2 131 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF833PQ6ZTB9 187 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 MOB1BQ7L9L4 216 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 C6orf201Q7Z4U5 140 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 BAGE3Q86Y29 109 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 BAGE2Q86Y30 109 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 ODF3L1Q8IXM7 274 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 TMEM217Q8N7C4 229 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 LINC00482Q8N8I6 264 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 ZNF709Q8N972 641 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 OR10V1Q8NGI7 309 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 OR10G8Q8NGN5 311 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 RNASE8Q8TDE3 154 aaKnown RBP6.28□□□□□ -1.4
SCN1A-207ENST00000507401 HSPB9Q9BQS6 159 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 VPS25Q9BRG1 176 aa6.28□□□□□ -1.4
SCN1A-207ENST00000507401 MCRIP2Q9BUT9 160 aaKnown RBP6.28□□□□□ -1.4
SCN1A-207ENST00000507401 WDR61Q9GZS3 305 aaKnown RBP6.28□□□□□ -1.4
SCN1A-207ENST00000507401 C9JCJ5 164 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 RAB29O14966 203 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 SYNGR2O43760 224 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 CST7O76096 145 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 S1PR2O95136 353 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 MT-CO2P00403 227 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 SERPINE2P07093 398 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 GPX1P07203 203 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 OR10J4P0C629 311 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 GNRHRP30968 328 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 MC5RP33032 325 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 SP6Q3SY56 376 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 SPATA45Q537H7 98 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 PHLDA2Q53GA4 152 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 KHDC1LQ5JSQ8 128 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 LCN15Q6UWW0 184 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 Q6ZWC4 215 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 TBC1D26Q86UD7 250 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 NPBQ8NG41 125 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 SFRP2Q96HF1 295 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 RNF5Q99942 180 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 NABP2Q9BQ15 211 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 TMEM147Q9BVK8 224 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 LINC00527Q9UJ94 153 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 PAM16Q9Y3D7 125 aa6.27□□□□□ -1.41
SCN1A-207ENST00000507401 IGHG4P01861 327 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 HLA-DQA1P01909 254 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 HLA-DRB1P01911 266 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 PRB2P02812 416 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-207ENST00000507401 F2RP25116 425 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 TSPOP30536 169 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 PAX9P55771 341 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 FXYD4P59646 89 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 CFHR3Q02985 330 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 EGFEM1PQ0D2K5 195 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 BATFQ16520 125 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 OCIAD2Q56VL3 154 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 CXorf66Q5JRM2 361 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-207ENST00000507401 FAM78BQ5VT40 261 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 CST9LP1Q5W188 147 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 PRR27Q6MZM9 219 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 MTURNQ8N3F0 131 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 MRAPQ8TCY5 172 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 VN1R17PQ8TDU5 208 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 IL1F10Q8WWZ1 152 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 BORCS7Q96B45 105 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 NUDT11Q96G61 164 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 KCNS1Q96KK3 526 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 PMCHL2Q9BQD1 86 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 ST20Q9HBF5 79 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 IL36BQ9NZH7 164 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 DNAH3Q8TD57 4116 aa6.26□□□□□ -1.41
SCN1A-207ENST00000507401 C11orf94C9JXX5 98 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 CCL24O00175 119 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 NBR2O15453 112 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 HYPMO75409 117 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 NDUFA3O95167 84 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 NDUFB8O95169 186 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 NBEAP1P0C6P0 100 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 SAA2P0DJI9 122 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-207ENST00000507401 SMIM17P0DL12 118 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 CT45A6P0DMU7 189 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 CT45A5P0DMU8 189 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 CT45A7P0DMV0 189 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 PSMB8P28062 276 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 PPIFP30405 207 aaKnown RBP6.25□□□□□ -1.41
SCN1A-207ENST00000507401 RUNX1Q01196 453 aa6.25□□□□□ -1.41
SCN1A-207ENST00000507401 MMDQ15546 238 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 136.4 ms