RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 IL3RAP26951 378 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 PFN2P35080 140 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 FOXG1P55316 489 aaPredicted RBP4.21□□□□□ -1.74
USP54-216ENST00000498143 DSCR4P56555 118 aaPredicted RBP4.21□□□□□ -1.74
USP54-216ENST00000498143 OSR2Q8N2R0 312 aa4.21□□□□□ -1.74
USP54-216ENST00000498143 SORL1Q92673 2214 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 A0A1W2PPM0 123 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 FAM90A20PA6NIJ5 464 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 HOXA3O43365 443 aaPredicted RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 PSPNO60542 156 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 COX5AP20674 150 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 CCL8P80075 99 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 FAM219BQ5XKK7 198 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 NABP1Q96AH0 204 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 SPRY4Q9C004 299 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 NHP2Q9NX24 153 aaKnown RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 SIGLEC8Q9NYZ4 499 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 HILPDAQ9Y5L2 63 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 A0A087WWL8 130 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 FAM90A7PA6NKC0 464 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 FAM90A22PA8MWA6 464 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 FAM90A12PA8MX19 464 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 FAM90A23PA8MXZ1 464 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 SSSCA1O60232 199 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 FSHBP01225 129 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 APCSP02743 223 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 CXCL1P09341 107 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 BLVRBP30043 206 aaPredicted RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 RPL15P61313 204 aaKnown RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 ZNF718Q3SXZ3 478 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 OR5C1Q8NGR4 320 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 IMMP1LQ96LU5 166 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 ZNF443Q9Y2A4 671 aaPredicted RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 DNAJC9-AS1A6NH13 148 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 PITX3O75364 302 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 VDAC2P45880 294 aaPredicted RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 CIRBPQ14011 172 aaKnown RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 PHLDA2Q53GA4 152 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 LSM10Q969L4 123 aaKnown RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 ZNF837Q96EG3 531 aaPredicted RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 MRPL53Q96EL3 112 aaKnown RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 WDYHV1Q96HA8 205 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 EMC6Q9BV81 110 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 MRPL18Q9H0U6 180 aaKnown RBP4.2□□□□□ -1.74
USP54-216ENST00000498143 MED12Q93074 2177 aa4.2□□□□□ -1.74
USP54-216ENST00000498143 NDUFC2-KCTD14E9PQ53 114 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 FBXL19-AS1Q494R0 122 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 TMEM155Q4W5P6 130 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 FAM201AQ5SY85 155 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 ZNF324BQ6AW86 544 aaPredicted RBP4.19□□□□□ -1.74
USP54-216ENST00000498143 COX14Q96I36 57 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 VSIG4Q9Y279 399 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 VWA8A3KMH1 1905 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 IGLC7A0M8Q6 106 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 SRP19P09132 144 aaKnown RBP4.19□□□□□ -1.74
USP54-216ENST00000498143 FOXF2Q12947 444 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 CDSNQ15517 529 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 TEX43Q6ZNM6 134 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 TMEM86BQ8N661 226 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 TPRX1Q8N7U7 411 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 OR11H6Q8NGC7 330 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 PELI2Q9HAT8 420 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 PNRC2Q9NPJ4 139 aaKnown RBP4.19□□□□□ -1.74
USP54-216ENST00000498143 IDI2-AS1Q9NZ38 188 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 C1RLQ9NZP8 487 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 VCANP13611 3396 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 SHISA3A0PJX4 238 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 KBTBD11O94819 623 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 AMY1AP04745 511 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 PRSS1P07477 247 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 CLDN17P56750 224 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 RPS28P62857 69 aaKnown RBP4.19□□□□□ -1.74
USP54-216ENST00000498143 ZNF56Q15929 161 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 ACP7Q6ZNF0 438 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 MDP1Q86V88 176 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 C15orf53Q8NAA6 179 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 LY6G5BQ8NDX9 201 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 MBD3L2Q8NHZ7 208 aaPredicted RBP4.19□□□□□ -1.74
USP54-216ENST00000498143 TMEM243Q9BU79 118 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 RNASE7Q9H1E1 156 aaKnown RBP4.19□□□□□ -1.74
USP54-216ENST00000498143 TAS2R4Q9NYW5 299 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 SCN1AP35498 2009 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 TMEM272A0A1B0GTI8 110 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 LOC102725191A0A1B0GVB3 256 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 FRG2CA6NGY1 282 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 LINC01545Q5VT33 79 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 Q6ZUT4 128 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 ATP6V0E2Q8NHE4 81 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 BCL2L10Q9HD36 194 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 EPDR1Q9UM22 224 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 FAM215AQ9Y5M1 114 aa4.19□□□□□ -1.74
USP54-216ENST00000498143 SMIM26A0A096LP01 95 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 C5orf63A6NC05 138 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 NXPH3O95157 252 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 CA6P23280 308 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 FAM57BQ71RH2 274 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 TCF23Q7RTU1 214 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 ZNRF2Q8NHG8 242 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 NPIPB3Q92617 1050 aa4.18□□□□□ -1.74
USP54-216ENST00000498143 CNRIP1Q96F85 164 aaPredicted RBP4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms