RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 TRAV9-1A0A075B6T8 112 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 ATP5IP56385 69 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 FAM71F2Q6NXP2 309 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 GTSF1Q8WW33 167 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 ALKBH7Q9BT30 221 aaPredicted RBP13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 LY96Q9Y6Y9 160 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 CBY3A6NI87 242 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 FSTL3O95633 263 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 PCP4P48539 62 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 C8orf31Q8N9H6 132 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 RNASE8Q8TDE3 154 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 MBD6Q96DN6 1003 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 URB1-AS1Q96HZ7 61 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 C17orf77Q96MU5 243 aa13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 MRPL32Q9BYC8 188 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-210ENST00000494566 C20orf202A1L168 122 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 LGALS7P47929 136 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 FOXE3Q13461 319 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 C19orf24Q9BVV8 132 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 IGHV3OR16-8A0A075B7F1 116 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 RBP4P02753 201 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 NBEAP1P0C6P0 100 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 PPP1R27Q86WC6 154 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 COL25A1Q9BXS0 654 aaPredicted RBP13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 EPDR1Q9UM22 224 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 ZFP30Q9Y2G7 519 aa13.14□□□□□ -0.31
CCDC88B-210ENST00000494566 INS-IGF2F8WCM5 200 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 BPIFB3P59826 476 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 ADORA2A-AS1P86434 159 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 MPV17L2Q567V2 206 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 GOLT1AQ6ZVE7 132 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 THAP8Q8NA92 274 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 OR1L4Q8NGR5 311 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 GRAMD2BQ96HH9 432 aa13.13□□□□□ -0.31
CCDC88B-210ENST00000494566 OR4C46A6NHA9 309 aa13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 TIMM23O14925 209 aa13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 TEX22C9J3V5 150 aa13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 P01737 135 aa13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 KLF17Q5JT82 389 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 TEX45Q8NA69 505 aa13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 CRYGBP07316 175 aa13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 SRSF12Q8WXF0 261 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 DAZAP1Q96EP5 407 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-210ENST00000494566 CUBNO60494 3623 aa13.11□□□□□ -0.31
CCDC88B-210ENST00000494566 LOC389332A0A1B0GUA5 103 aa13.11□□□□□ -0.31
CCDC88B-210ENST00000494566 VAMP3Q15836 100 aa13.11□□□□□ -0.31
CCDC88B-210ENST00000494566 Q9H3A6 140 aa13.11□□□□□ -0.31
CCDC88B-210ENST00000494566 IGHV3-35A0A0C4DH35 117 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 C2orf70A6NJV1 201 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 CHEK1O14757 476 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 CNIH1O95406 144 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 HIST1H1EP10412 219 aaKnown RBP13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 COL8A1P27658 744 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 BCL6BQ8N143 479 aaPredicted RBP13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 OR8B3Q8NGG8 313 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 CHODLQ9H9P2 273 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 MSRB2Q9Y3D2 182 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 WFDC3Q8IUB2 231 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 TMEM116Q8NCL8 245 aa13.1□□□□□ -0.31
CCDC88B-210ENST00000494566 IGHV1-24A0A0C4DH33 117 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 KLHDC1Q8N7A1 406 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 NAA38Q9BRA0 125 aaKnown RBP13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 TRAV9-2A0A087WT02 112 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 NDUFS7O75251 213 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 CRYGCP07315 174 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 A0A087X0K7 114 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 NUDT3O95989 172 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 IGHV3-23P01764 117 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 PSG1P11464 419 aa13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 RPP21Q9H633 154 aaKnown RBP13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 F11RQ9Y624 299 aaKnown RBP13.09□□□□□ -0.31
CCDC88B-210ENST00000494566 M0R3E3 92 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 HBBP68871 147 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 HES1Q14469 280 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 IGFL4Q6B9Z1 124 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 PERPQ96FX8 193 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 SERTM2A0A1B0GWG4 89 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 LEPROTL1O95214 131 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 FAM106CPP0CH98 169 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 FAM106AQ4KMX7 169 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 C22orf15Q8WYQ4 148 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 GPR82Q96P67 336 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 TMEM70Q9BUB7 260 aa13.08□□□□□ -0.32
CCDC88B-210ENST00000494566 TMUB1Q9BVT8 246 aa13.07□□□□□ -0.32
CCDC88B-210ENST00000494566 LIPFP07098 398 aa13.07□□□□□ -0.32
CCDC88B-210ENST00000494566 ETFRF1Q6IPR1 90 aa13.07□□□□□ -0.32
CCDC88B-210ENST00000494566 TNFRSF14Q92956 283 aa13.07□□□□□ -0.32
CCDC88B-210ENST00000494566 S100A7P31151 101 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 UQCRFS1P47985 274 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 TRGV9Q99603 122 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 A0A1W2PPR1 153 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 ARMS2P0C7Q2 107 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 HTR1DP28221 377 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 LY6DQ14210 128 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 C7orf69Q9H7B7 122 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 OR2T8A6NH00 312 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 LY6LH3BQJ8 138 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 TCRAP04437 139 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 GAGE1Q13065 139 aa13.06□□□□□ -0.32
CCDC88B-210ENST00000494566 OR4F17Q8NGA8 305 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms