RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 CEP295Q9C0D2 2601 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 SFTA2Q6UW10 78 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 IGHV3-66A0A0C4DH42 116 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 M0R3E3 92 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 DLX1P56177 255 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 MTURNQ8N3F0 131 aa13.29□□□□□ -0.28
CCDC88B-209ENST00000494080 TMEM238C9JI98 176 aa13.28□□□□□ -0.28
CCDC88B-209ENST00000494080 SLAQ13239 276 aa13.28□□□□□ -0.28
CCDC88B-209ENST00000494080 TMEM78Q5T7P6 136 aa13.28□□□□□ -0.28
CCDC88B-209ENST00000494080 V9GYV3 84 aa13.28□□□□□ -0.28
CCDC88B-209ENST00000494080 OR1N2Q8NGR9 330 aa13.28□□□□□ -0.28
CCDC88B-209ENST00000494080 MRPL16Q9NX20 251 aaKnown RBP13.28□□□□□ -0.28
CCDC88B-209ENST00000494080 DUX4L9Q6RFH8 374 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-209ENST00000494080 TRBV20OR9-2A0A075B6H5 130 aa13.27□□□□□ -0.28
CCDC88B-209ENST00000494080 IGKV1-16P04430 117 aa13.27□□□□□ -0.28
CCDC88B-209ENST00000494080 FAM215AQ9Y5M1 114 aa13.27□□□□□ -0.28
CCDC88B-209ENST00000494080 FAM90A9PA6NNJ1 464 aa13.27□□□□□ -0.28
CCDC88B-209ENST00000494080 ESDP10768 282 aa13.27□□□□□ -0.28
CCDC88B-209ENST00000494080 SSC4DQ8WTU2 575 aa13.27□□□□□ -0.28
CCDC88B-209ENST00000494080 C21orf62Q9NYP8 219 aa13.27□□□□□ -0.28
CCDC88B-209ENST00000494080 IGHV1-8P0DP01 117 aa13.27□□□□□ -0.29
CCDC88B-209ENST00000494080 K7EM74 188 aa13.27□□□□□ -0.29
CCDC88B-209ENST00000494080 THBDP07204 575 aa13.27□□□□□ -0.29
CCDC88B-209ENST00000494080 KIR3DS1Q14943 382 aa13.27□□□□□ -0.29
CCDC88B-209ENST00000494080 MLANAQ16655 118 aa13.27□□□□□ -0.29
CCDC88B-209ENST00000494080 IGHV2-26A0A0B4J1V2 119 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 FAM231BA6NCW3 169 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 NBR2O15453 112 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 KIR3DL3Q8N743 410 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 ARPC1AQ92747 370 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 HBDP02042 147 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 NPPCP23582 126 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 FXYD7P58549 80 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 ERVK11-1P61568 191 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 PAX2Q02962 417 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 IFI27L1Q96BM0 104 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 LSM4Q9Y4Z0 139 aaKnown RBP13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 LMO1P25800 156 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 FAM168AQ92567 244 aa13.26□□□□□ -0.29
CCDC88B-209ENST00000494080 E7EQL1 145 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 MMP23AO75900 390 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 IGFL3Q6UXB1 125 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 NUP37Q8NFH4 326 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 TCRBV4S1A1TA0A5B7 111 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 RPS20P60866 119 aaKnown RBP13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 ASPHD1Q5U4P2 390 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 FAM169BQ8N8A8 192 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 CKS1BP61024 79 aa13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 FGF23Q9GZV9 251 aaPredicted RBP13.25□□□□□ -0.29
CCDC88B-209ENST00000494080 COL8A2P25067 703 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 KLRD1Q13241 179 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 TTC32Q5I0X7 151 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 OR9G4Q8NGQ1 327 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 K7ENP7 123 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 ATP5G2Q06055 141 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 BCL6BQ8N143 479 aaPredicted RBP13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 TEX45Q8NA69 505 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 FER1L6-AS1Q8NA97 138 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 C7orf69Q9H7B7 122 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 ZNF479Q96JC4 524 aa13.24□□□□□ -0.29
CCDC88B-209ENST00000494080 TRGV3P03979 118 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 Q6AWC8 147 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 OR5AN1Q8NGI8 311 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 A0A1B0GW15 77 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 CIARTQ8N365 385 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 YPEL4Q96NS1 127 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 WISP2O76076 250 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 APOMO95445 188 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 WNT2P09544 360 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 PRSS33Q8NF86 280 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 MSRB2Q9Y3D2 182 aa13.23□□□□□ -0.29
CCDC88B-209ENST00000494080 TRAV8-1A0A0A6YYK1 113 aa13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 K7EN84 100 aa13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 TGFAP01135 160 aa13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 PRO3102Q9H379 93 aa13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 DOPEY1Q5JWR5 2465 aa13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 LEPP41159 167 aa13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 SPRY4Q9C004 299 aa13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 KLF17Q5JT82 389 aaPredicted RBP13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 SLC25A48Q6ZT89 311 aaKnown RBP13.22□□□□□ -0.29
CCDC88B-209ENST00000494080 H0YJW9 148 aa13.21□□□□□ -0.29
CCDC88B-209ENST00000494080 IGLV1-44P01699 117 aa13.21□□□□□ -0.29
CCDC88B-209ENST00000494080 EEF1AKMT3Q96AZ1 226 aa13.21□□□□□ -0.29
CCDC88B-209ENST00000494080 OTORQ9NRC9 128 aa13.21□□□□□ -0.29
CCDC88B-209ENST00000494080 LINC00527Q9UJ94 153 aa13.21□□□□□ -0.29
CCDC88B-209ENST00000494080 GGTLC3B5MD39 225 aa13.21□□□□□ -0.29
CCDC88B-209ENST00000494080 CLEC19AQ6UXS0 136 aa13.21□□□□□ -0.29
CCDC88B-209ENST00000494080 NDUFA3O95167 84 aa13.21□□□□□ -0.3
CCDC88B-209ENST00000494080 IGHV2-70DA0A0C4DH43 119 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 K7EP13 123 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 ATP5LO75964 103 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 IGHV3-11P01762 117 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 OR10J6PQ8NGY7 276 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 IGHV1-3A0A0C4DH29 117 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 DLX6P56179 175 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 CENPVQ7Z7K6 275 aaPredicted RBP13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 CCDC168Q8NDH2 2452 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 IGLC7A0M8Q6 106 aa13.2□□□□□ -0.3
CCDC88B-209ENST00000494080 GNLYP22749 145 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms