RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 HYPMO75409 117 aa13.16□□□□□ -0.3
COL9A3-214ENST00000490398 OR5G3P0C626 314 aa13.16□□□□□ -0.3
COL9A3-214ENST00000490398 HLA-DRB4P13762 266 aa13.16□□□□□ -0.3
COL9A3-214ENST00000490398 PSMB3P49720 205 aa13.16□□□□□ -0.3
COL9A3-214ENST00000490398 SELENOTP62341 195 aa13.16□□□□□ -0.3
COL9A3-214ENST00000490398 SAV1Q9H4B6 383 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-214ENST00000490398 GPN1Q9HCN4 374 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-214ENST00000490398 LYRM2Q9NU23 88 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-214ENST00000490398 HLA-DRB4X5D2U9 266 aa13.16□□□□□ -0.3
COL9A3-214ENST00000490398 X6R8D5 127 aa13.16□□□□□ -0.3
COL9A3-214ENST00000490398 CXorf65A6NEN9 183 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 H0YIZ8 118 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 RBMY1A1P0DJD3 496 aaKnown RBP13.15□□□□□ -0.3
COL9A3-214ENST00000490398 RBMY1CP0DJD4 496 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 PRB4P10163 310 aaPredicted RBP13.15□□□□□ -0.3
COL9A3-214ENST00000490398 GALR1P47211 349 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 FXYD7P58549 80 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 RBMY1FQ15415 496 aaKnown RBP13.15□□□□□ -0.3
COL9A3-214ENST00000490398 TMEM252Q8N6L7 170 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 Q8NAQ8 132 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 C16orf92Q96LL3 132 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 ARV1Q9H2C2 271 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 XCL2Q9UBD3 114 aa13.15□□□□□ -0.3
COL9A3-214ENST00000490398 ISLRO14498 428 aa13.14□□□□□ -0.31
COL9A3-214ENST00000490398 SNRPCP09234 159 aaKnown RBP13.14□□□□□ -0.31
COL9A3-214ENST00000490398 HLA-DMBP28068 263 aa13.14□□□□□ -0.31
COL9A3-214ENST00000490398 ID1P41134 155 aa13.14□□□□□ -0.31
COL9A3-214ENST00000490398 RAP2BP61225 183 aa13.14□□□□□ -0.31
COL9A3-214ENST00000490398 MORN5Q5VZ52 161 aa13.14□□□□□ -0.31
COL9A3-214ENST00000490398 OR5AC2Q9NZP5 309 aa13.14□□□□□ -0.31
COL9A3-214ENST00000490398 WDR83OSQ9Y284 106 aa13.14□□□□□ -0.31
COL9A3-214ENST00000490398 IGHV4-28A0A0C4DH34 117 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 ZNF705EA8MWA4 302 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-214ENST00000490398 MRPS12O15235 138 aaKnown RBP13.13□□□□□ -0.31
COL9A3-214ENST00000490398 PRAF2O60831 178 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 PVALBP20472 110 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-214ENST00000490398 SULT1A1P50225 295 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 H2BFSP57053 126 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 NANOS2P60321 138 aaKnown RBP13.13□□□□□ -0.31
COL9A3-214ENST00000490398 VWC2Q2TAL6 325 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 FOXI2Q6ZQN5 318 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 ZNF546Q86UE3 836 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 RNF182Q8N6D2 247 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 TMEM37Q8WXS4 190 aa13.13□□□□□ -0.31
COL9A3-214ENST00000490398 C11orf68Q9H3H3 251 aaKnown RBP13.13□□□□□ -0.31
COL9A3-214ENST00000490398 ATF4P18848 351 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-214ENST00000490398 CAMLGP49069 296 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 FGL1Q08830 312 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 LRRC37A5PQ49AS3 106 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 MIC13Q5XKP0 118 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 ZNF709Q8N972 641 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 SLC35B3Q9H1N7 401 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 UQCC1Q9NVA1 299 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 DNAH2Q9P225 4427 aa13.12□□□□□ -0.31
COL9A3-214ENST00000490398 A0A0J9YX75 114 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 UBE2L5PA0A1B0GUS4 154 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 ZNF705DP0CH99 300 aaPredicted RBP13.11□□□□□ -0.31
COL9A3-214ENST00000490398 ZNF705BP0CI00 300 aaPredicted RBP13.11□□□□□ -0.31
COL9A3-214ENST00000490398 MEOX2P50222 304 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 DEFA1P59665 94 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 DEFA3P59666 94 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 NHLH2Q02577 135 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 FAM78BQ5VT40 261 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 LINC00305Q7Z4B0 112 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 OR4B1Q8NGF8 309 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 GPR82Q96P67 336 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 NMES1Q9C002 83 aa13.11□□□□□ -0.31
COL9A3-214ENST00000490398 ELOA3CA0A087WX78 387 aaPredicted RBP13.1□□□□□ -0.31
COL9A3-214ENST00000490398 TRAV5A0A0B4J249 113 aa13.1□□□□□ -0.31
COL9A3-214ENST00000490398 PRR20EP86478 221 aa13.1□□□□□ -0.31
COL9A3-214ENST00000490398 PRR20CP86479 221 aa13.1□□□□□ -0.31
COL9A3-214ENST00000490398 PRR20DP86480 221 aa13.1□□□□□ -0.31
COL9A3-214ENST00000490398 PRR20BP86481 221 aa13.1□□□□□ -0.31
COL9A3-214ENST00000490398 PRR20AP86496 221 aa13.1□□□□□ -0.31
COL9A3-214ENST00000490398 TMEM41BQ5BJD5 291 aa13.1□□□□□ -0.31
COL9A3-214ENST00000490398 CEMP1Q6PRD7 247 aaPredicted RBP13.1□□□□□ -0.31
COL9A3-214ENST00000490398 H3BTX0 84 aa13.09□□□□□ -0.31
COL9A3-214ENST00000490398 RPL7P18124 248 aaKnown RBP13.09□□□□□ -0.31
COL9A3-214ENST00000490398 S100A11P31949 105 aa13.09□□□□□ -0.31
COL9A3-214ENST00000490398 OPCMLQ14982 345 aa13.09□□□□□ -0.31
COL9A3-214ENST00000490398 STX12Q86Y82 276 aa13.09□□□□□ -0.31
COL9A3-214ENST00000490398 C11orf45Q8TAV5 145 aa13.09□□□□□ -0.31
COL9A3-214ENST00000490398 PHLDA1Q8WV24 401 aaPredicted RBP13.09□□□□□ -0.31
COL9A3-214ENST00000490398 RPRMQ9NS64 109 aa13.09□□□□□ -0.31
COL9A3-214ENST00000490398 BIRC6Q9NR09 4857 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 A0A087X0K7 114 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 SSNA1O43805 119 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 COX7A2P2O60397 106 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 BAXQ07812 192 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 EBLN2Q6P2I7 272 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 AMTNQ6UX39 209 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 RNF126Q9BV68 326 aa13.08□□□□□ -0.32
COL9A3-214ENST00000490398 A8MTW9 85 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 MIFP14174 115 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 FGF7P21781 194 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 NUTF2P61970 127 aaKnown RBP13.07□□□□□ -0.32
COL9A3-214ENST00000490398 PXDC1Q5TGL8 231 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 SAMD13Q5VXD3 122 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 C10orf113Q5VZT2 155 aa13.07□□□□□ -0.32
COL9A3-214ENST00000490398 PPP1R1CQ8WVI7 109 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 158.8 ms