RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SLC25A39Q9BZJ4 359 aaPredicted RBP16.54■□□□□ 0.24
COL9A3-213ENST00000489045 RCL1Q9Y2P8 373 aaKnown RBP16.54■□□□□ 0.24
COL9A3-213ENST00000489045 VPS13DQ5THJ4 4388 aa16.54■□□□□ 0.24
COL9A3-213ENST00000489045 PSG9Q00887 426 aa16.53■□□□□ 0.24
COL9A3-213ENST00000489045 FRAS1Q86XX4 4008 aa16.53■□□□□ 0.24
COL9A3-213ENST00000489045 CCSO14618 274 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 TSC22D2O75157 780 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 LINC00869P0C866 280 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 TAS2R30P59541 319 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 RAP2BP61225 183 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 PRR20EP86478 221 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 PRR20CP86479 221 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 PRR20DP86480 221 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 PRR20BP86481 221 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 PRR20AP86496 221 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 OR10P1Q8NGE3 313 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 SHANK2-AS3Q9BTD1 123 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 HIGD1AQ9Y241 93 aa16.52■□□□□ 0.24
COL9A3-213ENST00000489045 IGHV4-4A0A075B6R2 117 aa16.51■□□□□ 0.23
COL9A3-213ENST00000489045 FNDC10F2Z333 226 aa16.51■□□□□ 0.23
COL9A3-213ENST00000489045 HYPMO75409 117 aa16.51■□□□□ 0.23
COL9A3-213ENST00000489045 SELENOTP62341 195 aa16.51■□□□□ 0.23
COL9A3-213ENST00000489045 NPVFQ9HCQ7 196 aa16.51■□□□□ 0.23
COL9A3-213ENST00000489045 MGAT4CQ9UBM8 478 aa16.51■□□□□ 0.23
COL9A3-213ENST00000489045 DEFB131BA0A096LNP1 70 aa16.5■□□□□ 0.23
COL9A3-213ENST00000489045 SMIM9A6NGZ8 99 aa16.5■□□□□ 0.23
COL9A3-213ENST00000489045 MBPP02686 304 aaPredicted RBP16.5■□□□□ 0.23
COL9A3-213ENST00000489045 TCRBP04435 133 aa16.5■□□□□ 0.23
COL9A3-213ENST00000489045 OR5G3P0C626 314 aa16.5■□□□□ 0.23
COL9A3-213ENST00000489045 PLP1P60201 277 aa16.5■□□□□ 0.23
COL9A3-213ENST00000489045 FGL1Q08830 312 aa16.5■□□□□ 0.23
COL9A3-213ENST00000489045 UHRF2Q96PU4 802 aa16.5■□□□□ 0.23
COL9A3-213ENST00000489045 TRAV6A0A075B6T7 132 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 TRAV8-2A0A0B4J237 113 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 C7orf66A4D0T2 115 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 A8MTW9 85 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 EMP1P54849 157 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 SLC38A11Q08AI6 406 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 ARL16Q0P5N6 197 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 IGFL4Q6B9Z1 124 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 TEPPQ6URK8 271 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 GOLT1BQ9Y3E0 138 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 RFNGQ9Y644 331 aa16.49■□□□□ 0.23
COL9A3-213ENST00000489045 TMEM189A5PLL7 270 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 K7EPK0 472 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 RPL7P18124 248 aaKnown RBP16.48■□□□□ 0.23
COL9A3-213ENST00000489045 AMTNQ6UX39 209 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 C1orf158Q8N1D5 194 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 RNF182Q8N6D2 247 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 SEC22CQ9BRL7 303 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 RNF126Q9BV68 326 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 ARL6Q9H0F7 186 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 NUDT15Q9NV35 164 aa16.48■□□□□ 0.23
COL9A3-213ENST00000489045 DNAH10Q8IVF4 4471 aa16.47■□□□□ 0.23
COL9A3-213ENST00000489045 AMBPP02760 352 aa16.47■□□□□ 0.23
COL9A3-213ENST00000489045 SPART-AS1P0CW21 52 aa16.47■□□□□ 0.23
COL9A3-213ENST00000489045 ZNF846Q147U1 533 aa16.47■□□□□ 0.23
COL9A3-213ENST00000489045 FAM25EA8MYX2 175 aa16.46■□□□□ 0.23
COL9A3-213ENST00000489045 PATE2Q6UY27 113 aa16.46■□□□□ 0.23
COL9A3-213ENST00000489045 ZNF431Q8TF32 576 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-213ENST00000489045 CCDC32Q9BV29 185 aa16.46■□□□□ 0.23
COL9A3-213ENST00000489045 LSM5Q9Y4Y9 91 aaKnown RBP16.46■□□□□ 0.23
COL9A3-213ENST00000489045 L7N2F9 121 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 DUSP14O95147 198 aaKnown RBP16.45■□□□□ 0.22
COL9A3-213ENST00000489045 HBE1P02100 147 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 CNN1P51911 297 aaKnown RBP16.45■□□□□ 0.22
COL9A3-213ENST00000489045 VAMP2P63027 116 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 S100A7AQ86SG5 101 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 ZNF546Q86UE3 836 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 ZNF738Q8NE65 137 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 GGACTQ9BVM4 153 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 ARV1Q9H2C2 271 aa16.45■□□□□ 0.22
COL9A3-213ENST00000489045 A0A087X0K7 114 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 C5orf51A6NDU8 294 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 GOSR2O14653 212 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 AGPAT2O15120 278 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 OR11H7Q8NGC8 314 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 IGF2BP2-AS1Q96M15 143 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 DKK2Q9UBU2 259 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 DNAH6Q9C0G6 4158 aa16.44■□□□□ 0.22
COL9A3-213ENST00000489045 LOC102723971A0A1B0GUV8 181 aa16.43■□□□□ 0.22
COL9A3-213ENST00000489045 H2AFB2P0C5Z0 115 aa16.43■□□□□ 0.22
COL9A3-213ENST00000489045 SPINK13Q1W4C9 94 aa16.43■□□□□ 0.22
COL9A3-213ENST00000489045 PXDC1Q5TGL8 231 aa16.43■□□□□ 0.22
COL9A3-213ENST00000489045 FAM222AQ5U5X8 452 aa16.43■□□□□ 0.22
COL9A3-213ENST00000489045 C12orf45Q8N5I9 185 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-213ENST00000489045 TEX48A0A1B0GUV7 120 aa16.42■□□□□ 0.22
COL9A3-213ENST00000489045 M0R2Z0 102 aa16.42■□□□□ 0.22
COL9A3-213ENST00000489045 CXCL3P19876 107 aa16.42■□□□□ 0.22
COL9A3-213ENST00000489045 BCAP31P51572 246 aa16.42■□□□□ 0.22
COL9A3-213ENST00000489045 RRN3P1Q2M238 152 aa16.42■□□□□ 0.22
COL9A3-213ENST00000489045 MGST2Q99735 147 aa16.42■□□□□ 0.22
COL9A3-213ENST00000489045 TMEM208Q9BTX3 173 aa16.42■□□□□ 0.22
COL9A3-213ENST00000489045 MRPS12O15235 138 aaKnown RBP16.41■□□□□ 0.22
COL9A3-213ENST00000489045 CAV2P51636 162 aa16.41■□□□□ 0.22
COL9A3-213ENST00000489045 LRRC20Q8TCA0 184 aa16.41■□□□□ 0.22
COL9A3-213ENST00000489045 C2orf50Q96LR7 162 aa16.41■□□□□ 0.22
COL9A3-213ENST00000489045 NIPSNAP3BQ9BS92 247 aa16.41■□□□□ 0.22
COL9A3-213ENST00000489045 NDUFAF3Q9BU61 184 aa16.41■□□□□ 0.22
COL9A3-213ENST00000489045 C11orf1Q9H5F2 150 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 148.8 ms