RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 SYNGR2O43760 224 aa13.03□□□□□ -0.32
HDAC6-231ENST00000488905 NOL3O60936 208 aaKnown RBP13.03□□□□□ -0.32
HDAC6-231ENST00000488905 ORM2P19652 201 aa13.03□□□□□ -0.32
HDAC6-231ENST00000488905 GATA2P23769 480 aaPredicted RBP13.03□□□□□ -0.32
HDAC6-231ENST00000488905 AKR1C1Q04828 323 aa13.03□□□□□ -0.32
HDAC6-231ENST00000488905 SOHLH1Q5JUK2 328 aa13.03□□□□□ -0.32
HDAC6-231ENST00000488905 TMEM147Q9BVK8 224 aa13.03□□□□□ -0.32
HDAC6-231ENST00000488905 LRP1BQ9NZR2 4599 aa13.02□□□□□ -0.32
HDAC6-231ENST00000488905 H3BMQ9 156 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 M0R2Z0 102 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 INSP01308 110 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 CNN1P51911 297 aaKnown RBP13.02□□□□□ -0.33
HDAC6-231ENST00000488905 SPINK13Q1W4C9 94 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 TMEM182Q6ZP80 229 aaPredicted RBP13.02□□□□□ -0.33
HDAC6-231ENST00000488905 ACOT7LQ6ZUV0 252 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 TOMM5Q8N4H5 51 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 C15orf53Q8NAA6 179 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 OR11H7Q8NGC8 314 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 MCFD2Q8NI22 146 aa13.02□□□□□ -0.33
HDAC6-231ENST00000488905 H3BP45 60 aa13.01□□□□□ -0.33
HDAC6-231ENST00000488905 DUSP14O95147 198 aaKnown RBP13.01□□□□□ -0.33
HDAC6-231ENST00000488905 SFT2D2O95562 160 aa13.01□□□□□ -0.33
HDAC6-231ENST00000488905 S100A7P31151 101 aa13.01□□□□□ -0.33
HDAC6-231ENST00000488905 PPP1R1AQ13522 171 aa13.01□□□□□ -0.33
HDAC6-231ENST00000488905 SPANXN5Q5MJ07 72 aa13.01□□□□□ -0.33
HDAC6-231ENST00000488905 SLC25A21Q9BQT8 299 aaPredicted RBP13.01□□□□□ -0.33
HDAC6-231ENST00000488905 TRAV8-2A0A0B4J237 113 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 LYRM9A8MSI8 78 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 H3BRN7 92 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 CRXO43186 299 aaPredicted RBP13□□□□□ -0.33
HDAC6-231ENST00000488905 HOXB5P09067 269 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 PYDC2Q56P42 97 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 C1orf134Q5TEV5 83 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 IGFL4Q6B9Z1 124 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 BAP18Q8IXM2 172 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 RNF182Q8N6D2 247 aa13□□□□□ -0.33
HDAC6-231ENST00000488905 ZNF705GA8MUZ8 300 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-231ENST00000488905 PRM2P04554 102 aa12.99□□□□□ -0.33
HDAC6-231ENST00000488905 FAM3BP58499 235 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-231ENST00000488905 ZNF575Q86XF7 245 aa12.99□□□□□ -0.33
HDAC6-231ENST00000488905 DEDD2Q8WXF8 326 aa12.99□□□□□ -0.33
HDAC6-231ENST00000488905 SLC25A39Q9BZJ4 359 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-231ENST00000488905 STRAPQ9Y3F4 350 aaKnown RBP12.99□□□□□ -0.33
HDAC6-231ENST00000488905 V9GYH0 126 aa12.99□□□□□ -0.33
HDAC6-231ENST00000488905 SMCO3A2RU48 225 aa12.98□□□□□ -0.33
HDAC6-231ENST00000488905 TSPOP30536 169 aa12.98□□□□□ -0.33
HDAC6-231ENST00000488905 B2MP61769 119 aa12.98□□□□□ -0.33
HDAC6-231ENST00000488905 FGL1Q08830 312 aa12.98□□□□□ -0.33
HDAC6-231ENST00000488905 TMEM144Q7Z5S9 345 aa12.98□□□□□ -0.33
HDAC6-231ENST00000488905 ZNF738Q8NE65 137 aa12.98□□□□□ -0.33
HDAC6-231ENST00000488905 BOLA2-SMG1P6H3BVE0 249 aa12.97□□□□□ -0.33
HDAC6-231ENST00000488905 RAP2BP61225 183 aa12.97□□□□□ -0.33
HDAC6-231ENST00000488905 CYP2G1PQ6ZSU1 146 aa12.97□□□□□ -0.33
HDAC6-231ENST00000488905 SHANK2-AS3Q9BTD1 123 aa12.97□□□□□ -0.33
HDAC6-231ENST00000488905 HIGD1AQ9Y241 93 aa12.97□□□□□ -0.33
HDAC6-231ENST00000488905 TRAV12-2A0A075B6T6 113 aa12.96□□□□□ -0.33
HDAC6-231ENST00000488905 PLAC8L1A1L4L8 177 aa12.96□□□□□ -0.33
HDAC6-231ENST00000488905 IL5P05113 134 aa12.96□□□□□ -0.33
HDAC6-231ENST00000488905 DEFB130BP0DP73 79 aa12.96□□□□□ -0.33
HDAC6-231ENST00000488905 DEFB130AP0DP74 79 aa12.96□□□□□ -0.33
HDAC6-231ENST00000488905 RPL7P18124 248 aaKnown RBP12.96□□□□□ -0.33
HDAC6-231ENST00000488905 ATG101Q9BSB4 218 aa12.96□□□□□ -0.33
HDAC6-231ENST00000488905 LINC00869P0C866 280 aa12.95□□□□□ -0.34
HDAC6-231ENST00000488905 UBE2MP61081 183 aaKnown RBP12.95□□□□□ -0.34
HDAC6-231ENST00000488905 UHRF2Q96PU4 802 aa12.95□□□□□ -0.34
HDAC6-231ENST00000488905 A0A087X0K7 114 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 HYPMO75409 117 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 ADAP1O75689 374 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 CXCL3P19876 107 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 AZU1P20160 251 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 PLP1P60201 277 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 POLR2GP62487 172 aaKnown RBP eCLIP12.94□□□□□ -0.34
HDAC6-231ENST00000488905 HIST1H1AQ02539 215 aaPredicted RBP12.94□□□□□ -0.34
HDAC6-231ENST00000488905 TMEM256Q8N2U0 113 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 OR8A1Q8NGG7 326 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 PSENENQ9NZ42 101 aa12.94□□□□□ -0.34
HDAC6-231ENST00000488905 F5H768 121 aa12.93□□□□□ -0.34
HDAC6-231ENST00000488905 SSSCA1O60232 199 aa12.93□□□□□ -0.34
HDAC6-231ENST00000488905 OR5G3P0C626 314 aa12.93□□□□□ -0.34
HDAC6-231ENST00000488905 SELENOTP62341 195 aa12.93□□□□□ -0.34
HDAC6-231ENST00000488905 RHOBP62745 196 aa12.93□□□□□ -0.34
HDAC6-231ENST00000488905 ID3Q02535 119 aa12.93□□□□□ -0.34
HDAC6-231ENST00000488905 APOBP04114 4563 aaKnown RBP12.93□□□□□ -0.34
HDAC6-231ENST00000488905 C9orf170A2RU37 121 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 PMS2P5A8MQ11 134 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 NUDT3O95989 172 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 ATP5G1P05496 136 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 S100A5P33763 92 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 ATP5G3P48201 142 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 FCN2Q15485 313 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 PSG3Q16557 428 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 S100A7AQ86SG5 101 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 ZNRF2Q8NHG8 242 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 C16orf74Q96GX8 76 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 LINC01587Q99440 93 aa12.92□□□□□ -0.34
HDAC6-231ENST00000488905 NBDYA0A0U1RRE5 68 aa12.91□□□□□ -0.34
HDAC6-231ENST00000488905 CCNKO75909 580 aa12.91□□□□□ -0.34
HDAC6-231ENST00000488905 TAS2R60P59551 318 aa12.91□□□□□ -0.34
HDAC6-231ENST00000488905 RRAS2P62070 204 aaPredicted RBP12.91□□□□□ -0.34
HDAC6-231ENST00000488905 DLK1P80370 383 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms