RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 J3QR89 54 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 ISLRO14498 428 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 OR2J3O76001 311 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 OR7C1O76099 320 aaPredicted RBP6.16□□□□□ -1.42
USP4-211ENST00000485450 FAM90A15PP0C7V4 464 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 FAM90A13PP0C7W8 464 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 FAM90A14PP0C7W9 464 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 FAM90A24PP0C7X0 464 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 ZNF331Q9NQX6 463 aaPredicted RBP6.16□□□□□ -1.42
USP4-211ENST00000485450 PRO0461Q9UI25 63 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 OR2W1Q9Y3N9 320 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 KIR3DS1Q14943 382 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 TPRX1Q8N7U7 411 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 LINC00574Q9H8X3 128 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 ONECUT1Q9UBC0 465 aa6.16□□□□□ -1.42
USP4-211ENST00000485450 PTPN13Q12923 2485 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.15□□□□□ -1.42
USP4-211ENST00000485450 RRHO14718 337 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 FCN3O75636 299 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 AREGP15514 252 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 VDAC2P45880 294 aaPredicted RBP6.15□□□□□ -1.42
USP4-211ENST00000485450 TCL1AP56279 114 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 TTC9CQ8N5M4 171 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 LY6G5BQ8NDX9 201 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 RNASE7Q9H1E1 156 aaKnown RBP6.15□□□□□ -1.42
USP4-211ENST00000485450 WDR83OSQ9Y284 106 aa6.15□□□□□ -1.42
USP4-211ENST00000485450 APOA2P02652 100 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 SPINK8P0C7L1 97 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 GNG4P50150 75 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 C9orf139Q6ZV77 190 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 GCSAMQ8N6F7 178 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 ZNF257Q9Y2Q1 563 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 TMEM178BH3BS89 294 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 IGLV2-14P01704 120 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 FABP2P12104 132 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 MZT1Q08AG7 82 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 ZNF146Q15072 292 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 PDLIM3Q53GG5 364 aaPredicted RBP6.15□□□□□ -1.43
USP4-211ENST00000485450 CENPWQ5EE01 88 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 Q6ZUT4 128 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 LINC00173Q6ZV60 143 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 GRAMD2BQ96HH9 432 aa6.15□□□□□ -1.43
USP4-211ENST00000485450 IGHV1-24A0A0C4DH33 117 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 FABP5P3A8MUU1 101 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 OR9G9P0C7N8 305 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 FCGR2BP31994 310 aaPredicted RBP6.14□□□□□ -1.43
USP4-211ENST00000485450 LMO4P61968 165 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 RPL8P62917 257 aaKnown RBP6.14□□□□□ -1.43
USP4-211ENST00000485450 CATR1Q13166 79 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 FXYD3Q14802 87 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 H1FXQ92522 213 aaKnown RBP6.14□□□□□ -1.43
USP4-211ENST00000485450 CHCHD1Q96BP2 118 aaKnown RBP6.14□□□□□ -1.43
USP4-211ENST00000485450 DYSFO75923 2080 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 DSCAMO60469 2012 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 CMYA5Q8N3K9 4069 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 KBTBD11-OT1A0A1B0GTJ5 212 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 LRRC30A6NM36 301 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 SRRM5B3KS81 715 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 LEPROTL1O95214 131 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 GCHFRP30047 84 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 OPRK1P41145 380 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 ANXA2RQ3ZCQ2 193 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 SPRNQ5BIV9 151 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 GDF5OSQ5U4N7 250 aa6.14□□□□□ -1.43
USP4-211ENST00000485450 LIN7CQ9NUP9 197 aaKnown RBP6.14□□□□□ -1.43
USP4-211ENST00000485450 OR5AL1P0C617 328 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 EDDM3BP56851 147 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 SRSF2Q01130 221 aaKnown RBP6.13□□□□□ -1.43
USP4-211ENST00000485450 FGFRL1Q8N441 504 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 ZNF645Q8N7E2 425 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 MPDU1O75352 247 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 IBA57Q5T440 356 aaKnown RBP6.13□□□□□ -1.43
USP4-211ENST00000485450 Q6AWC8 147 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 PQLC2Q6ZP29 291 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 ARPC1AQ92747 370 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 UBTD1Q9HAC8 227 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 CUBNO60494 3623 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 SH2D7A6NKC9 451 aaPredicted RBP6.13□□□□□ -1.43
USP4-211ENST00000485450 P0C879 139 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 LINC01545Q5VT33 79 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 PHLDA1Q8WV24 401 aaPredicted RBP6.13□□□□□ -1.43
USP4-211ENST00000485450 ANAPC13Q9BS18 74 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 MAP1LC3CQ9BXW4 147 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 RABAC1Q9UI14 185 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 HILPDAQ9Y5L2 63 aa6.13□□□□□ -1.43
USP4-211ENST00000485450 CA1P00915 261 aaPredicted RBP6.12□□□□□ -1.43
USP4-211ENST00000485450 IGLV2-8P01709 118 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 RBP4P02753 201 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 MGST1P10620 155 aaKnown RBP6.12□□□□□ -1.43
USP4-211ENST00000485450 TEPPQ6URK8 271 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 OR4A16Q8NH70 328 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 LRRC29Q8WV35 223 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 TRBV6-6A0A0A6YYG2 114 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 A0A1W2PRE2 83 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 NPIPB11E5RHQ5 1161 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 F8W1H4 67 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 SAMD5Q5TGI4 173 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 LINC00596Q86U02 117 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 GGTLC1Q9BX51 225 aa6.12□□□□□ -1.43
USP4-211ENST00000485450 SIGLEC8Q9NYZ4 499 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms