RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 RPS27P42677 84 aaKnown RBP3.86□□□□□ -1.79
USP40-213ENST00000483216 CA7P43166 264 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 FGF12P61328 243 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 RUNX1Q01196 453 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 SRSF6Q13247 344 aaKnown RBP3.86□□□□□ -1.79
USP40-213ENST00000483216 FAM27BQ5VT28 67 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 TMEM42Q69YG0 159 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 Q6ZS92 163 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 FAM231DQ6ZW35 169 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 SPATA12Q7Z6I5 190 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 TMEM256Q8N2U0 113 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 C17orf78Q8N4C9 275 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 FER1L6-AS1Q8NA97 138 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 OR10W1Q8NGF6 305 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 OR8B3Q8NGG8 313 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 VSTM2AQ8TAG5 236 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 LMX1AQ8TE12 382 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 ABHD3Q8WU67 409 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 OR4C12Q96R67 309 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 OR8B2Q96RD0 313 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 NPCDR1Q9BY65 106 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 NPVFQ9HCQ7 196 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 ENY2Q9NPA8 101 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 SIGLEC8Q9NYZ4 499 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 POLDIP2Q9Y2S7 368 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 LHFPL6Q9Y693 200 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 SCN3AQ9NY46 2000 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 BDP1A6H8Y1 2624 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 F5P12259 2224 aa3.86□□□□□ -1.79
USP40-213ENST00000483216 VCANP13611 3396 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 IGKV1-9A0A0C4DH69 117 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 A0A0G2JMM0 328 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 A0A1W2PPB8 328 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 A0A1W2PRE2 83 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 TMEM189A5PLL7 270 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 KIR3DP1A8MWS1 328 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 OR11H12B2RN74 326 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 TMEM262E9PQX1 116 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 F5H5K5 113 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 OR2J3O76001 311 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 LEPROTL1O95214 131 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 NAPSAO96009 420 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 CA2P00918 260 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 APOA2P02652 100 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 IGKV3-11P04433 115 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 C3orf79P0CE67 100 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 IGLC1P0CG04 106 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 USF1P22415 310 aaPredicted RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 CEBPDP49716 269 aaPredicted RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 SUB1P53999 127 aaKnown RBP eCLIP3.85□□□□□ -1.79
USP40-213ENST00000483216 FGF8P55075 233 aaPredicted RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 UCNP55089 124 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 HSD52Q0P140 79 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 TIMM23BQ5SRD1 257 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 IBA57Q5T440 356 aaKnown RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 C1orf185Q5T7R7 199 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 Q6AWC8 147 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 ZNF818PQ6ZRF7 136 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 H2BFWTQ7Z2G1 175 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 ANKRD37Q7Z713 158 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 ZNF645Q8N7E2 425 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 OR11H1Q8NG94 326 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 OR2Z1Q8NG97 314 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 OR2K2Q8NGT1 345 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 OR11H2Q8NH07 326 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 BLNKQ8WV28 456 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 MRAP2Q96G30 205 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 HSD17B10Q99714 261 aaKnown RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 FAM103A1Q9BTL3 118 aaKnown RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 RTL8AQ9BWD3 113 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 MRPL32Q9BYC8 188 aaKnown RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 NXF5Q9H1B4 397 aaKnown RBP3.85□□□□□ -1.79
USP40-213ENST00000483216 ZNF257Q9Y2Q1 563 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 MPC1Q9Y5U8 109 aa3.85□□□□□ -1.79
USP40-213ENST00000483216 SPTBN5Q9NRC6 3674 aaKnown RBP3.84□□□□□ -1.79
USP40-213ENST00000483216 COL4A2P08572 1712 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 NCOR1O75376 2440 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 TTC28Q96AY4 2481 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 CUL9Q8IWT3 2517 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 LRP4O75096 1905 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 FANCMQ8IYD8 2048 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 TRAV38-1A0A0B4J264 116 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 LOC100131303A0A0U1RQF7 123 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 SMIM27A0A1W2PRY6 76 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 PSMB11A5LHX3 300 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 OR4C46A6NHA9 309 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 A8MWL6 223 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 K7EP34 96 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 SMPD2O60906 423 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 IGHV3-48P01763 117 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 CBLN1P23435 193 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 HTR1DP28221 377 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 SRIP30626 198 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 S100A7P31151 101 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 TFPI2P48307 235 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 FABP6P51161 128 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 KRTAP10-8P60410 259 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 TMEM97Q5BJF2 176 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 BVES-AS1Q5T3Y7 98 aa3.84□□□□□ -1.79
USP40-213ENST00000483216 PLCXD3Q63HM9 321 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms