RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 SAMD13Q5VXD3 122 aa8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 OR8I2Q8N0Y5 310 aa8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 OR4D5Q8NGN0 318 aa8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 CIB3Q96Q77 187 aaPredicted RBP8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 C20orf85Q9H1P6 137 aa8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 SLC25A32Q9H2D1 315 aa8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 PLA2G2EQ9NZK7 142 aa8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 FLVCR2Q9UPI3 526 aa8.7□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 TEX48A0A1B0GUV7 120 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 UPK1BO75841 260 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 TCRBP04435 133 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 MEOX2P50222 304 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 RPP30P78346 268 aaKnown RBP8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 ASAH1Q13510 395 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 FAM222AQ5U5X8 452 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 OR4B1Q8NGF8 309 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 NIPSNAP3BQ9BS92 247 aa8.69□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 TRAV8-2A0A0B4J237 113 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 PMS2P5A8MQ11 134 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 CRXO43186 299 aaPredicted RBP8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 HOXB5P09067 269 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 ANXA7P20073 488 aaKnown RBP8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 GATA2P23769 480 aaPredicted RBP8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 EBLN2Q6P2I7 272 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 RSG1Q9BU20 258 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 MAGT1Q9H0U3 335 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 RPRMQ9NS64 109 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 DOK5Q9P104 306 aa8.68□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 IGHV3OR16-12A0A075B7B8 117 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 WRBO00258 174 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 GALR1P47211 349 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 EMP1P54849 157 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 DEFA1P59665 94 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 DEFA3P59666 94 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 PLP1P60201 277 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 RNF212Q495C1 297 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 TMEM144Q7Z5S9 345 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 OR1B1Q8NGR6 318 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 ENKURQ8TC29 256 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 MITD1Q8WV92 249 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 C16orf92Q96LL3 132 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 IGF2BP2-AS1Q96M15 143 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 GPR82Q96P67 336 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 NUDT15Q9NV35 164 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 GOLT1BQ9Y3E0 138 aa8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 YTHDF2Q9Y5A9 579 aaKnown RBP8.67□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 TRAV6A0A075B6T7 132 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 LOC102723971A0A1B0GUV8 181 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 PRSS29PA6NIE9 313 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 HBE1P02100 147 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 H2AFB2P0C5Z0 115 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 RRN3P1Q2M238 152 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 BPIFCQ8NFQ6 507 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 PPP1R14BQ96C90 147 aa8.66□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 DNAH11Q96DT5 4516 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 PLAC8L1A1L4L8 177 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 H3BRN7 92 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 M0R2N4 97 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 PRM2P04554 102 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 ORM2P19652 201 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 CNN1P51911 297 aaKnown RBP8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 SPANXN5Q5MJ07 72 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 ACOT7LQ6ZUV0 252 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 OR11H7Q8NGC8 314 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 ZNF431Q8TF32 576 aaPredicted RBP8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 SHANK2-AS3Q9BTD1 123 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 SLC25A39Q9BZJ4 359 aaPredicted RBP8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 SLC25A22Q9H936 323 aa8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 STRAPQ9Y3F4 350 aaKnown RBP8.65□□□□□ -1.02
MSH5-SAPCD1-205ENST00000476085 K7EPK0 472 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 MRPS12O15235 138 aaKnown RBP8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 ADAP1O75689 374 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 MED14OSP0DP75 135 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 TSPOP30536 169 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 POLR2GP62487 172 aaKnown RBP eCLIP8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 IGFL4Q6B9Z1 124 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 CYP2G1PQ6ZSU1 146 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 SMIM8Q96KF7 97 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 TMEM147Q9BVK8 224 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 GPN1Q9HCN4 374 aaPredicted RBP8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 PAIP2BQ9ULR5 123 aaKnown RBP8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 PCLOQ9Y6V0 5065 aa8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 DYNC1H1Q14204 4646 aaKnown RBP8.64□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 A0A087X0K7 114 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 FNDC10F2Z333 226 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 H3BP45 60 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 PRAF2O60831 178 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 DUSP14O95147 198 aaKnown RBP8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 IL5P05113 134 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 B2MP61769 119 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 IAH1Q2TAA2 248 aaPredicted RBP8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 TMEM88Q6PEY1 159 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 TMEM14EPQ6UXP3 125 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 PATE2Q6UY27 113 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 C12orf45Q8N5I9 185 aaPredicted RBP8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 RNF182Q8N6D2 247 aa8.63□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 LYRM9A8MSI8 78 aa8.62□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 ZNF705GA8MUZ8 300 aaPredicted RBP8.62□□□□□ -1.03
MSH5-SAPCD1-205ENST00000476085 M0R2Z0 102 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms