RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 Q6ZTC4 211 aa10.15□□□□□ -0.78
UPF3A-204ENST00000475218 NUDT15Q9NV35 164 aa10.15□□□□□ -0.78
UPF3A-204ENST00000475218 APLNQ9ULZ1 77 aa10.15□□□□□ -0.78
UPF3A-204ENST00000475218 F6UB75 175 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 IGKV3-20P01619 116 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 FABP1P07148 127 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 LINC00052Q96N35 136 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 STRAPQ9Y3F4 350 aaKnown RBP10.14□□□□□ -0.79
UPF3A-204ENST00000475218 ZNF98A6NK75 572 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 ZNF705FA8MVS1 300 aaPredicted RBP10.14□□□□□ -0.79
UPF3A-204ENST00000475218 ZNF705DP0CH99 300 aaPredicted RBP10.14□□□□□ -0.79
UPF3A-204ENST00000475218 ZNF705BP0CI00 300 aaPredicted RBP10.14□□□□□ -0.79
UPF3A-204ENST00000475218 FXYD7P58549 80 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 RPP30P78346 268 aaKnown RBP10.14□□□□□ -0.79
UPF3A-204ENST00000475218 FOXI2Q6ZQN5 318 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 OR8I2Q8N0Y5 310 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 C2CD4CQ8TF44 421 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 CLUHP3Q96NS8 147 aa10.14□□□□□ -0.79
UPF3A-204ENST00000475218 ISLRO14498 428 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 SSSCA1O60232 199 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 C12orf74Q32Q52 190 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 TMEM14EPQ6UXP3 125 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 TMEM144Q7Z5S9 345 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 OR11H7Q8NGC8 314 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 COQ8AQ8NI60 647 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 MITD1Q8WV92 249 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 ASB13Q8WXK3 278 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 SMIM8Q96KF7 97 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 SCRT1Q9BWW7 348 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 SLC35B3Q9H1N7 401 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 MED9Q9NWA0 146 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 PSENENQ9NZ42 101 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 PFDN2Q9UHV9 154 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 SLC45A2Q9UMX9 530 aa10.13□□□□□ -0.79
UPF3A-204ENST00000475218 RCL1Q9Y2P8 373 aaKnown RBP10.13□□□□□ -0.79
UPF3A-204ENST00000475218 A8MTW9 85 aa10.12□□□□□ -0.79
UPF3A-204ENST00000475218 ORM2P19652 201 aa10.12□□□□□ -0.79
UPF3A-204ENST00000475218 AKR1C1Q04828 323 aa10.12□□□□□ -0.79
UPF3A-204ENST00000475218 ARL16Q0P5N6 197 aa10.12□□□□□ -0.79
UPF3A-204ENST00000475218 TRAV8-2A0A0B4J237 113 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 A0A0J9YX75 114 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 IGLL5B9A064 214 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 CFDP00746 253 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-204ENST00000475218 C4orf46Q504U0 113 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 TOR2AQ5JU69 321 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 CYP2G1PQ6ZSU1 146 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 LRRC20Q8TCA0 184 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 C1QTNF4Q9BXJ3 329 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 SLC25A22Q9H936 323 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 C11orf94C9JXX5 98 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 H3BRN7 92 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 IL5P05113 134 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 METTL15P1P0C7V9 234 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 ID1P41134 155 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 NUTF2P61970 127 aaKnown RBP10.11□□□□□ -0.79
UPF3A-204ENST00000475218 IAH1Q2TAA2 248 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-204ENST00000475218 FAM78BQ5VT40 261 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 IGFL4Q6B9Z1 124 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 AMTNQ6UX39 209 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 BPIFCQ8NFQ6 507 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 OR1B1Q8NGR6 318 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 NEU1Q99519 415 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 RSG1Q9BU20 258 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 C20orf85Q9H1P6 137 aa10.11□□□□□ -0.79
UPF3A-204ENST00000475218 TMA7Q9Y2S6 64 aaKnown RBP10.11□□□□□ -0.79
UPF3A-204ENST00000475218 TRAV6A0A075B6T7 132 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 LOC105371267A0A1B0GV96 52 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 SSNA1O43805 119 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 IFNA21P01568 189 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 PLP1P60201 277 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 RAP2BP61225 183 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 PATE2Q6UY27 113 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 C1orf158Q8N1D5 194 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 GPN1Q9HCN4 374 aaPredicted RBP10.1□□□□□ -0.79
UPF3A-204ENST00000475218 DOK5Q9P104 306 aa10.1□□□□□ -0.79
UPF3A-204ENST00000475218 HECTD4Q9Y4D8 3996 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 TRAV10A0A0B4J240 114 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 SMLR1H3BR10 107 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 CCSO14618 274 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 MBPP02686 304 aaPredicted RBP10.09□□□□□ -0.79
UPF3A-204ENST00000475218 GIPP09681 153 aaPredicted RBP10.09□□□□□ -0.79
UPF3A-204ENST00000475218 DLK1P80370 383 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 SLC51BQ86UW2 128 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 OR4B1Q8NGF8 309 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 UHRF2Q96PU4 802 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 SHANK2-AS3Q9BTD1 123 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 SLC25A39Q9BZJ4 359 aaPredicted RBP10.09□□□□□ -0.79
UPF3A-204ENST00000475218 SMCO3A2RU48 225 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 K7EPK0 472 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 TSC22D2O75157 780 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 GALR1P47211 349 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 MEOX2P50222 304 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 TCTAP57738 103 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 LGALSLQ3ZCW2 172 aaPredicted RBP10.09□□□□□ -0.79
UPF3A-204ENST00000475218 C16orf92Q96LL3 132 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 TMEM147Q9BVK8 224 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 C11orf1Q9H5F2 150 aa10.09□□□□□ -0.79
UPF3A-204ENST00000475218 IGHV4-4A0A075B6R2 117 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 SCGB1D2O95969 90 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms