RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 DNAL4O96015 105 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 ATP5G3P48201 142 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 OR52E5Q8NH55 327 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 EEF1AKMT3Q96AZ1 226 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 TRAV8-4A0A0B4J246 113 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 FAM181BA6NEQ2 426 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 C15orf65H3BRN8 121 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 C3orf79P0CE67 100 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 SSTR5P35346 364 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 MORN2Q502X0 79 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 MPV17L2Q567V2 206 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 FER1L6-AS1Q8NA97 138 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 CACNG8Q8WXS5 425 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 GEMIN7Q9H840 131 aaKnown RBP6.25□□□□□ -1.41
USP54-210ENST00000466048 NXT2Q9NPJ8 142 aaKnown RBP6.25□□□□□ -1.41
USP54-210ENST00000466048 SPTBN4Q9H254 2564 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 SHISA9B4DS77 424 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 H3BRM9 83 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 PLAUP00749 431 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 VDAC2P45880 294 aaPredicted RBP6.25□□□□□ -1.41
USP54-210ENST00000466048 MFAP4P55083 255 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 ATP5G2Q06055 141 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 MST1LQ2TV78 715 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 NEU1Q99519 415 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 MGST2Q99735 147 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 MOB4Q9Y3A3 225 aa6.25□□□□□ -1.41
USP54-210ENST00000466048 TRAV40A0A0B4J280 105 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 DPM2O94777 84 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 SPINK8P0C7L1 97 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 RHOGP84095 191 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 LINC01551Q86U37 167 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 GAFA1Q96PS6 74 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 CEP295Q9C0D2 2601 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 CHD8Q9HCK8 2581 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 PLA2G2AP14555 144 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 DLX4Q92988 240 aaPredicted RBP6.24□□□□□ -1.41
USP54-210ENST00000466048 TMEM160Q9NX00 188 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 A0A1B0GUS0 222 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 H7C2G1 150 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 RRHO14718 337 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 NPFFO15130 113 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 PRSS2P07478 247 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 IGLC2P0DOY2 106 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 IGLC3P0DOY3 106 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 SELLP14151 372 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 UBE2E1P51965 193 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 ZNF585BQ52M93 769 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 TMEM78Q5T7P6 136 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 TEX45Q8NA69 505 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 RNF114Q9Y508 228 aa6.24□□□□□ -1.41
USP54-210ENST00000466048 SPG11Q96JI7 2443 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 TMSB15BA0A087X1C1 80 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 TMEM238C9JI98 176 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 REG1AP05451 166 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 MGPP08493 103 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 CMC4P56277 68 aaPredicted RBP6.23□□□□□ -1.41
USP54-210ENST00000466048 MSMPQ1L6U9 139 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 COA6Q5JTJ3 125 aaKnown RBP6.23□□□□□ -1.41
USP54-210ENST00000466048 TSKUQ8WUA8 353 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 WFDC1Q9HC57 220 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 HIGD1CA8MV81 97 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 NBR2O15453 112 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 PFN1P07737 140 aaKnown RBP6.23□□□□□ -1.41
USP54-210ENST00000466048 IGHV1-8P0DP01 117 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 COL8A2P25067 703 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 LOXL3P58215 753 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 TMEM256Q8N2U0 113 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 OCC1Q8TAD7 63 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 ARPC1AQ92747 370 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 CITED1Q99966 193 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 WDR83OSQ9Y284 106 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 IGHV2-70DA0A0C4DH43 119 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 LY6HO94772 140 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 KIR2DL4Q99706 377 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 C11orf1Q9H5F2 150 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 LINC00574Q9H8X3 128 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 HEATR1Q9H583 2144 aaKnown RBP6.23□□□□□ -1.41
USP54-210ENST00000466048 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.23□□□□□ -1.41
USP54-210ENST00000466048 FSTL3O95633 263 aa6.23□□□□□ -1.41
USP54-210ENST00000466048 CD300EQ496F6 205 aaPredicted RBP6.23□□□□□ -1.41
USP54-210ENST00000466048 Q71RC1 249 aaPredicted RBP6.23□□□□□ -1.41
USP54-210ENST00000466048 KIR2DL5BA0A0G2JN68 375 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 KIR2DL5BA0A0G2JPC4 375 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 PRSS47A8MTI9 375 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 IGKV1-5P01602 117 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 DUTP33316 252 aaKnown RBP6.22□□□□□ -1.41
USP54-210ENST00000466048 FAM90A2PQ658T7 463 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 KIR2DL5AQ8N109 375 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 MAPK1IP1LQ8NDC0 245 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 IFI27L1Q96BM0 104 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 FOXC2Q99958 501 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 PEMTQ9UBM1 199 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 CHTOPQ9Y3Y2 248 aaKnown RBP6.22□□□□□ -1.41
USP54-210ENST00000466048 LAMA1P25391 3075 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 F8W1H4 67 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 IGLV2-14P01704 120 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 GRNP28799 593 aaKnown RBP6.22□□□□□ -1.41
USP54-210ENST00000466048 CX3CL1P78423 397 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 VMO1Q7Z5L0 202 aa6.22□□□□□ -1.41
USP54-210ENST00000466048 TMEM144Q7Z5S9 345 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms