RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 LYG2Q86SG7 212 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 MRPL52Q86TS9 123 aaKnown RBP2.17□□□□□ -2.06
VPS41-210ENST00000462429 ZNF680Q8NEM1 530 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 DEFB124Q8NES8 71 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 ANGPTL6Q8NI99 470 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 FNDC9Q8TBE3 224 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 NEK7Q8TDX7 302 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 MUCL1Q96DR8 90 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 RTL8AQ9BWD3 113 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 NMES1Q9C002 83 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 LPAR5Q9H1C0 372 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 METTL8Q9H825 291 aaKnown RBP2.17□□□□□ -2.06
VPS41-210ENST00000462429 ZNF286AQ9HBT8 521 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 ICOSQ9Y6W8 199 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 CPAMD8Q8IZJ3 1885 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 NOTCH2Q04721 2471 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 XIRP2A4UGR9 3374 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 NCOR1O75376 2440 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 CNTRLQ7Z7A1 2325 aa2.17□□□□□ -2.06
VPS41-210ENST00000462429 EML6Q6ZMW3 1958 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 TRAV8-2A0A0B4J237 113 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 IGKV1-9A0A0C4DH69 117 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 DUXBA0A1W2PPF3 345 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 C9orf170A2RU37 121 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 MEIS3P1A6NDR6 274 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 OR5H14A6NHG9 310 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 CD300LBA8K4G0 201 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 K7EPK0 472 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 PDCD6O75340 191 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 OR7C1O76099 320 aaPredicted RBP2.16□□□□□ -2.06
VPS41-210ENST00000462429 PMP2P02689 132 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 CSN2P05814 226 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 SLC25A4P12235 298 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 CBR1P16152 277 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 AKR1C4P17516 323 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 PSMB6P28072 239 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 OPRM1P35372 400 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 HAAOP46952 286 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 ZNF83P51522 516 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 FGF12P61328 243 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 UBA52P62987 128 aaKnown RBP2.16□□□□□ -2.06
VPS41-210ENST00000462429 FLI1Q01543 452 aaPredicted RBP2.16□□□□□ -2.06
VPS41-210ENST00000462429 PRDX4Q13162 271 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 DHRS2Q13268 280 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 IGFBP7Q16270 282 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 TAF9Q16594 264 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 DEFB109BQ30KR1 87 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 SPIN3Q5JUX0 258 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 TEX261Q6UWH6 196 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 CLEC18BQ6UXF7 455 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 Q6ZS49 121 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 SLC36A1Q7Z2H8 476 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 SLC51BQ86UW2 128 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 LYPD6Q86Y78 171 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 AMN1Q8IY45 258 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 OR5AS1Q8N127 324 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 ZFP82Q8N141 532 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 TCTEX1D1Q8N7M0 179 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 CNEP1R1Q8N9A8 125 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 ZNF565Q8N9K5 539 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 ZNF738Q8NE65 137 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 SLC30A7Q8NEW0 376 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 FDCSPQ8NFU4 85 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 OR4C13Q8NGP0 309 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 ARHGAP5-AS1Q96IT6 56 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 TMEM56Q96MV1 263 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 PECRQ9BY49 303 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 ARL6Q9H0F7 186 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 BANF2Q9H503 90 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 ASCL3Q9NQ33 180 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 RASL12Q9NYN1 266 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 U3KQ87 197 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 SDK2Q58EX2 2172 aa2.16□□□□□ -2.06
VPS41-210ENST00000462429 SZT2Q5T011 3432 aa2.15□□□□□ -2.06
VPS41-210ENST00000462429 DOCK10Q96BY6 2186 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 REV3LO60673 3130 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 IGKV1OR2-108A0A075B7D4 117 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 FXYD6-FXYD2A0A087WZ82 144 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 BORCS7-ASMTA0A0B4J1R7 106 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 A0A0G2JMM0 328 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 SPAARA0A1B0GVQ0 90 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 A0A1W2PPB8 328 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 A0A1W2PRS3 328 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 PQLC2LA1A4F0 135 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 KIR3DP1A8MWS1 328 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 IGLL5B9A064 214 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 C8orf87E5RJ46 101 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 J3QLI3 93 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 K7ERS5 55 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 DEGS1O15121 323 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 ARPC5O15511 151 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 ADAP1O75689 374 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 SFT2D2O95562 160 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 CA2P00918 260 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 IGHG2P01859 326 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 CTSDP07339 412 aaPredicted RBP2.15□□□□□ -2.07
VPS41-210ENST00000462429 ZNF728P0DKX0 622 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 TPT1P13693 172 aaKnown RBP2.15□□□□□ -2.07
VPS41-210ENST00000462429 CXCL3P19876 107 aa2.15□□□□□ -2.07
VPS41-210ENST00000462429 GZMHP20718 246 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms