RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 OR2T35Q8NGX2 323 aa16.94■□□□□ 0.3
CCDC28B-203ENST00000461819 CHAC2Q8WUX2 184 aa16.94■□□□□ 0.3
CCDC28B-203ENST00000461819 SLC39A9Q9NUM3 307 aa16.94■□□□□ 0.3
CCDC28B-203ENST00000461819 PXMP4Q9Y6I8 212 aa16.94■□□□□ 0.3
CCDC28B-203ENST00000461819 PSMG4Q5JS54 123 aa16.93■□□□□ 0.3
CCDC28B-203ENST00000461819 ZNF709Q8N972 641 aa16.93■□□□□ 0.3
CCDC28B-203ENST00000461819 OR1L4Q8NGR5 311 aa16.93■□□□□ 0.3
CCDC28B-203ENST00000461819 PFDN5Q99471 154 aa16.93■□□□□ 0.3
CCDC28B-203ENST00000461819 WDR61Q9GZS3 305 aaKnown RBP16.93■□□□□ 0.3
CCDC28B-203ENST00000461819 KCNIP2Q9NS61 270 aa16.93■□□□□ 0.3
CCDC28B-203ENST00000461819 IFNA5P01569 189 aa16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 RPL35AP18077 110 aaKnown RBP16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 RPL7P18124 248 aaKnown RBP16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 ATF4P18848 351 aaPredicted RBP16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 MEOX2P50222 304 aa16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 Q5BKY6 102 aa16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 TM2D3Q9BRN9 247 aa16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 RSG1Q9BU20 258 aa16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 DNAJC4Q9NNZ3 241 aa16.92■□□□□ 0.3
CCDC28B-203ENST00000461819 FXYD6-FXYD2A0A087WZ82 144 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 C17orf112F2Z3M2 114 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 ID1P41134 155 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 APOC4P55056 127 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 SAMD13Q5VXD3 122 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 SCGB1C1Q8TD33 95 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 TMEM37Q8WXS4 190 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 SPATA25Q9BR10 227 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 SEPSECSQ9HD40 501 aaKnown RBP16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 U3KQK5 164 aa16.91■□□□□ 0.3
CCDC28B-203ENST00000461819 AQP10Q96PS8 301 aa16.9■□□□□ 0.3
CCDC28B-203ENST00000461819 HUWE1Q7Z6Z7 4374 aaKnown RBP16.9■□□□□ 0.3
CCDC28B-203ENST00000461819 PSMB3P49720 205 aa16.89■□□□□ 0.29
CCDC28B-203ENST00000461819 STHQ8IWL8 128 aa16.89■□□□□ 0.29
CCDC28B-203ENST00000461819 INO80EQ8NBZ0 244 aaPredicted RBP16.89■□□□□ 0.29
CCDC28B-203ENST00000461819 C16orf92Q96LL3 132 aa16.89■□□□□ 0.29
CCDC28B-203ENST00000461819 RCHY1Q96PM5 261 aa16.89■□□□□ 0.29
CCDC28B-203ENST00000461819 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.88■□□□□ 0.29
CCDC28B-203ENST00000461819 LINC00052Q96N35 136 aa16.88■□□□□ 0.29
CCDC28B-203ENST00000461819 WFDC1Q9HC57 220 aa16.88■□□□□ 0.29
CCDC28B-203ENST00000461819 KNCNA6PVL3 124 aa16.87■□□□□ 0.29
CCDC28B-203ENST00000461819 ISLRO14498 428 aa16.87■□□□□ 0.29
CCDC28B-203ENST00000461819 SOCS3O14543 225 aa16.87■□□□□ 0.29
CCDC28B-203ENST00000461819 ACTL10Q5JWF8 245 aa16.87■□□□□ 0.29
CCDC28B-203ENST00000461819 MORN5Q5VZ52 161 aa16.87■□□□□ 0.29
CCDC28B-203ENST00000461819 GATAD1Q8WUU5 269 aa16.87■□□□□ 0.29
CCDC28B-203ENST00000461819 AGRNO00468 2067 aa16.87■□□□□ 0.29
CCDC28B-203ENST00000461819 KIR2DL5BA0A0G2JN68 375 aa16.86■□□□□ 0.29
CCDC28B-203ENST00000461819 KIR2DL5BA0A0G2JPC4 375 aa16.86■□□□□ 0.29
CCDC28B-203ENST00000461819 BPIFA4PQ86YQ2 179 aa16.86■□□□□ 0.29
CCDC28B-203ENST00000461819 KIR2DL5AQ8N109 375 aa16.86■□□□□ 0.29
CCDC28B-203ENST00000461819 KIR2DL5BQ8NHK3 375 aa16.86■□□□□ 0.29
CCDC28B-203ENST00000461819 PARD6GQ9BYG4 376 aaPredicted RBP16.86■□□□□ 0.29
CCDC28B-203ENST00000461819 RETNQ9HD89 108 aa16.86■□□□□ 0.29
CCDC28B-203ENST00000461819 ZNF266Q14584 549 aa16.85■□□□□ 0.29
CCDC28B-203ENST00000461819 GCSAMLQ5JQS6 135 aa16.85■□□□□ 0.29
CCDC28B-203ENST00000461819 TNFSF18Q9UNG2 199 aa16.85■□□□□ 0.29
CCDC28B-203ENST00000461819 A0A087X0K7 114 aa16.84■□□□□ 0.29
CCDC28B-203ENST00000461819 LRRC20Q8TCA0 184 aa16.84■□□□□ 0.29
CCDC28B-203ENST00000461819 C17orf77Q96MU5 243 aa16.84■□□□□ 0.29
CCDC28B-203ENST00000461819 TRAV5A0A0B4J249 113 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 RNF222A6NCQ9 220 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 G3V3Q6 166 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 SMLR1H3BR10 107 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 UBE2CO00762 179 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 FFAR4Q5NUL3 377 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 FAM78BQ5VT40 261 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 CSTL1Q9H114 145 aa16.83■□□□□ 0.28
CCDC28B-203ENST00000461819 MRPS12O15235 138 aaKnown RBP16.82■□□□□ 0.28
CCDC28B-203ENST00000461819 TRPT1Q86TN4 253 aaKnown RBP16.82■□□□□ 0.28
CCDC28B-203ENST00000461819 RPRMQ9NS64 109 aa16.82■□□□□ 0.28
CCDC28B-203ENST00000461819 NBEAL2Q6ZNJ1 2754 aa16.81■□□□□ 0.28
CCDC28B-203ENST00000461819 ARPC5O15511 151 aa16.81■□□□□ 0.28
CCDC28B-203ENST00000461819 DEFB135Q30KP9 77 aa16.81■□□□□ 0.28
CCDC28B-203ENST00000461819 LCN15Q6UWW0 184 aa16.81■□□□□ 0.28
CCDC28B-203ENST00000461819 TENM3Q9P273 2699 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 CA1P00915 261 aaPredicted RBP16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 SNRPCP09234 159 aaKnown RBP16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 CXCL2P19875 107 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 DEFB1P60022 68 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 IGFL4Q6B9Z1 124 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 Q6ZNX1 250 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 FOXI2Q6ZQN5 318 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 Q6ZWC4 215 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 RNF182Q8N6D2 247 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 C20orf173Q96LM9 149 aa16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 MRPL32Q9BYC8 188 aaKnown RBP16.8■□□□□ 0.28
CCDC28B-203ENST00000461819 TRAV8-2A0A0B4J237 113 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 SPP1P10451 314 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 HLA-DRB4P13762 266 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 SPATA31B1PQ5VZV4 182 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 EBLN2Q6P2I7 272 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 HSD17B11Q8NBQ5 300 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 SAV1Q9H4B6 383 aaPredicted RBP16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 TIMM9Q9Y5J7 89 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 HLA-DRB4X5D2U9 266 aa16.79■□□□□ 0.28
CCDC28B-203ENST00000461819 H3BTX0 84 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 IGLC2P0DOY2 106 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 GDF5OSQ5U4N7 250 aa16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 MORN3Q6PF18 240 aaPredicted RBP16.78■□□□□ 0.28
CCDC28B-203ENST00000461819 MIR17HGQ75NE6 70 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms