RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SYNJ2BPP57105 145 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 CCL20P78556 96 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 KLF5Q13887 457 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-205ENST00000454569 FAM209BQ5JX69 171 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 FAM78BQ5VT40 261 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 LCN15Q6UWW0 184 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 DLX4Q92988 240 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-205ENST00000454569 RAB24Q969Q5 203 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 ZNF503Q96F45 646 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 NARS2Q96I59 477 aaKnown RBP8.37□□□□□ -1.07
SCN9A-205ENST00000454569 SSBP4Q9BWG4 385 aaPredicted RBP8.37□□□□□ -1.07
SCN9A-205ENST00000454569 SCRT1Q9BWW7 348 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 MAP1LC3BQ9GZQ8 125 aa8.37□□□□□ -1.07
SCN9A-205ENST00000454569 TRAV1-1A0A0B4J248 108 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 NDUFA4O00483 81 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 COX7A2P2O60397 106 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 HYPMO75409 117 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 RELQ04864 619 aaPredicted RBP8.36□□□□□ -1.07
SCN9A-205ENST00000454569 FHL3Q13643 280 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 RPEL1Q2QD12 228 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 C10orf113Q5VZT2 155 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 ADAMTSL5Q6ZMM2 481 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 LINC00305Q7Z4B0 112 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 GPHB5Q86YW7 130 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 MBD3L1Q8WWY6 194 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 TMEM190Q8WZ59 177 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 FAM167A-AS1Q96KT0 104 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 TMPRSS5Q9H3S3 457 aa8.36□□□□□ -1.07
SCN9A-205ENST00000454569 SEC14L6B5MCN3 397 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 CCL24O00175 119 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 C17orf77Q96MU5 243 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 CLUHP3Q96NS8 147 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 SLC25A2Q9BXI2 301 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 SLC25A39Q9BZJ4 359 aaPredicted RBP8.35□□□□□ -1.07
SCN9A-205ENST00000454569 EIF5A2Q9GZV4 153 aaKnown RBP8.35□□□□□ -1.07
SCN9A-205ENST00000454569 TMEM231Q9H6L2 316 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 TREM1Q9NP99 234 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 FUT9Q9Y231 359 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 HIGD1AQ9Y241 93 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 U3KQE9 123 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 TMEM213A2RRL7 107 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 KRBOX1C9JBD0 128 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 H3BRN7 92 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 ZP3P21754 424 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 RHOBP62745 196 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 SRSF3P84103 164 aaKnown RBP8.35□□□□□ -1.07
SCN9A-205ENST00000454569 GUK1Q16774 197 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 NDUFA11Q86Y39 141 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 GATAD1Q8WUU5 269 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 DPF1Q92782 380 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 SHANK2-AS3Q9BTD1 123 aa8.35□□□□□ -1.07
SCN9A-205ENST00000454569 PKD1L1Q8TDX9 2849 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 ZNF98A6NK75 572 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 BUB3O43684 328 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 IFNA1P01562 189 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 FABP1P07148 127 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 PYYP10082 97 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 CRYBB3P26998 211 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 PEA15Q15121 130 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 OR1L4Q8NGR5 311 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 LINC00052Q96N35 136 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 GNG13Q9P2W3 67 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 RABAC1Q9UI14 185 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 SMAD5-AS1Q9Y6J3 95 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 NOTCH3Q9UM47 2321 aa8.34□□□□□ -1.07
SCN9A-205ENST00000454569 RBFOX3A6NFN3 312 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 H3BTX0 84 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 MRPS12O15235 138 aaKnown RBP8.33□□□□□ -1.08
SCN9A-205ENST00000454569 OR10J4P0C629 311 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 STAG3L2P0CL84 134 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 STAG3L3P0CL85 134 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 SUMO1P63165 101 aaKnown RBP8.33□□□□□ -1.08
SCN9A-205ENST00000454569 HAGHQ16775 308 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 FAM106AQ4KMX7 169 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 C1QL4Q86Z23 238 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 TMEM158Q8WZ71 300 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 PFDN5Q99471 154 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 ZNF747Q9BV97 191 aa8.33□□□□□ -1.08
SCN9A-205ENST00000454569 ANK2Q01484 3957 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 IGHV7-4-1A0A0J9YVY3 117 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 C2orf70A6NJV1 201 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 LGALS9O00182 355 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 SCGB2A1O75556 95 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 CD5P06127 495 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 S100A6P06703 90 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 ARL14EPLP0DKL9 152 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 C8orf88P0DMB2 117 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 PRB4P10163 310 aaPredicted RBP8.32□□□□□ -1.08
SCN9A-205ENST00000454569 NPPCP23582 126 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 RNF2Q99496 336 aa8.32□□□□□ -1.08
SCN9A-205ENST00000454569 MRPL32Q9BYC8 188 aaKnown RBP8.32□□□□□ -1.08
SCN9A-205ENST00000454569 LOC102723971A0A1B0GUV8 181 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 LOC105371267A0A1B0GV96 52 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 TMEM218A2RU14 115 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 A8MWP6 167 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 H3BQ15 152 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 K7EMT4 169 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 CHEK1O14757 476 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 CXorf1O96002 111 aa8.31□□□□□ -1.08
SCN9A-205ENST00000454569 CSN3P07498 182 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms