RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 PRB4P10163 310 aaPredicted RBP6.37□□□□□ -1.39
NEDD9-204ENST00000448183 TMEM155Q4W5P6 130 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 Q6P435 159 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 Q6ZRM9 215 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 C9orf139Q6ZV77 190 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 C5orf24Q7Z6I8 188 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 CHCHD5Q9BSY4 110 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 MYO7BQ6PIF6 2116 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 TRAV41A0A0B4J266 112 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 IGHV1-3A0A0C4DH29 117 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 VCYO14598 125 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 WNT2P09544 360 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 FXYD7P58549 80 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 SSBP2P81877 361 aaPredicted RBP6.37□□□□□ -1.39
NEDD9-204ENST00000448183 PSG3Q16557 428 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 OCIAD2Q56VL3 154 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 TMEM158Q8WZ71 300 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 COX11Q9Y6N1 276 aa6.37□□□□□ -1.39
NEDD9-204ENST00000448183 ARFGEF3Q5TH69 2177 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 BRCA1P38398 1863 aaKnown RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 TOMM40O96008 361 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 PFN1P07737 140 aaKnown RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 TMEM200BQ69YZ2 307 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 C2orf82Q6UX34 121 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 PLSCR4Q9NRQ2 329 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 NYNRINQ9P2P1 1898 aaKnown RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 OOSP1A8MZH6 123 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 METRNQ9UJH8 293 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 DOCK9Q9BZ29 2069 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 H0YJW9 148 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 SMAD7O15105 426 aaKnown RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 IL18BPO95998 194 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 LGALS1P09382 135 aaKnown RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 POLR3KQ9Y2Y1 108 aaPredicted RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 PDCD11Q14690 1871 aaKnown RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 CASP8AP2Q9UKL3 1982 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 SRRM4A7MD48 611 aaKnown RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 NTN3O00634 580 aaPredicted RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 CFPP27918 469 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 VDAC2P45880 294 aaPredicted RBP6.36□□□□□ -1.39
NEDD9-204ENST00000448183 ASCL4Q6XD76 172 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 CRIPAKQ8N1N5 446 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 Q8TAT8 98 aa6.36□□□□□ -1.39
NEDD9-204ENST00000448183 COL6A6A6NMZ7 2263 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 DOCK11Q5JSL3 2073 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 A0A1W2PRX2 142 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 RNASE2P10153 161 aaKnown RBP6.35□□□□□ -1.39
NEDD9-204ENST00000448183 ZNF672Q499Z4 452 aaPredicted RBP6.35□□□□□ -1.39
NEDD9-204ENST00000448183 TEX43Q6ZNM6 134 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 AMN1Q8IY45 258 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 PHLDA1Q8WV24 401 aaPredicted RBP6.35□□□□□ -1.39
NEDD9-204ENST00000448183 CHAC1Q9BUX1 264 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 ZNF581Q9P0T4 197 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 LINC00527Q9UJ94 153 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 ABCA4P78363 2273 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 CLPSP04118 112 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 SRD5A1P18405 259 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 S100A7L2Q5SY68 101 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 C17orf82Q86X59 251 aaPredicted RBP6.35□□□□□ -1.39
NEDD9-204ENST00000448183 LINC00477Q96M19 166 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 FANCMQ8IYD8 2048 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 TMEM178BH3BS89 294 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 C5orf64Q2M2E5 130 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 GATD1Q8NB37 220 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 WFDC12Q8WWY7 111 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 GFRA4Q9GZZ7 299 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 PHF3Q92576 2039 aaKnown RBP6.35□□□□□ -1.39
NEDD9-204ENST00000448183 TRPM7Q96QT4 1865 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 PLXNA1Q9UIW2 1896 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 E9PLN8 166 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 Q86TA4 180 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 RASL10AQ92737 203 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 JPT2Q9H910 190 aa6.35□□□□□ -1.39
NEDD9-204ENST00000448183 SHANK1Q9Y566 2161 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 PAX4O43316 350 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 MINOS1Q5TGZ0 78 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 ADAMTSL5Q6ZMM2 481 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 ZNF329Q86UD4 541 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 MCRIP2Q9BUT9 160 aaKnown RBP6.34□□□□□ -1.39
NEDD9-204ENST00000448183 SNHG12Q9BXW3 62 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 SIGLEC9Q9Y336 463 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 LSM4Q9Y4Z0 139 aaKnown RBP6.34□□□□□ -1.39
NEDD9-204ENST00000448183 MINOS1-NBL1R4GNA1 71 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 LCTP09848 1927 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 DOCK7Q96N67 2140 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 TRAV40A0A0B4J280 105 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 LILRA1O75019 489 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 NPC2P61916 151 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 RPL36AP83881 106 aaKnown RBP6.34□□□□□ -1.39
NEDD9-204ENST00000448183 FOXL2NBQ6ZUU3 175 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 C18orf32Q8TCD1 76 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 RPL36ALQ969Q0 106 aaKnown RBP6.34□□□□□ -1.39
NEDD9-204ENST00000448183 RCHY1Q96PM5 261 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 CSTL1Q9H114 145 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 TNFRSF6BO95407 300 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 TMEM249Q2WGJ8 235 aa6.34□□□□□ -1.39
NEDD9-204ENST00000448183 C14orf178Q8N769 122 aaPredicted RBP6.34□□□□□ -1.39
NEDD9-204ENST00000448183 SPINK8P0C7L1 97 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 LINC00205P59089 165 aa6.33□□□□□ -1.4
NEDD9-204ENST00000448183 HIST1H4AP62805 103 aaKnown RBP6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 97.6 ms