RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 TFPI2P48307 235 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 MAJINQ3KP22 176 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 FAM120AOSQ5T036 256 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 Q86TA4 180 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 OTORQ9NRC9 128 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 TMEM14CQ9P0S9 112 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 LAMTOR2Q9Y2Q5 125 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 SIAH2O43255 324 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 IGLC1P0CG04 106 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 GSX1Q9H4S2 264 aaPredicted RBP13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 ZFP30Q9Y2G7 519 aa13.03□□□□□ -0.32
CLCNKA-203ENST00000439316 FAM231BA6NCW3 169 aa13.02□□□□□ -0.32
CLCNKA-203ENST00000439316 Q56UQ5 140 aa13.02□□□□□ -0.32
CLCNKA-203ENST00000439316 RBPMS2Q6ZRY4 209 aaKnown RBP13.02□□□□□ -0.32
CLCNKA-203ENST00000439316 PPP1R27Q86WC6 154 aa13.02□□□□□ -0.32
CLCNKA-203ENST00000439316 STPG4Q8N801 248 aa13.02□□□□□ -0.32
CLCNKA-203ENST00000439316 PGLYRP4Q96LB8 373 aa13.02□□□□□ -0.32
CLCNKA-203ENST00000439316 MRPS16Q9Y3D3 137 aaKnown RBP13.02□□□□□ -0.32
CLCNKA-203ENST00000439316 BUB1B-PAK6H3BSN5 160 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 PSG1P11464 419 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 HOXB4P17483 251 aaPredicted RBP13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 TSPOP30536 169 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 DLX1P56177 255 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 LYZP61626 148 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 KIR3DL3Q8N743 410 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 RALYQ9UKM9 306 aaKnown RBP13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 INSIG2Q9Y5U4 225 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 ZNF462Q96JM2 2506 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 COL12A1Q99715 3063 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 I3L2K1 104 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 PRR31Q5SQ13 230 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 C16orf54Q6UWD8 224 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 SPATA12Q7Z6I5 190 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 CHCHD1Q96BP2 118 aaKnown RBP13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 DAZAP1Q96EP5 407 aaKnown RBP13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 SLC25A39Q9BZJ4 359 aaPredicted RBP13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 C1RLQ9NZP8 487 aa13.01□□□□□ -0.33
CLCNKA-203ENST00000439316 TRBV6-1A0A0K0K1D8 114 aa13□□□□□ -0.33
CLCNKA-203ENST00000439316 IGLV2-11P01706 119 aa13□□□□□ -0.33
CLCNKA-203ENST00000439316 ITLN2Q8WWU7 325 aaPredicted RBP13□□□□□ -0.33
CLCNKA-203ENST00000439316 SRSF12Q8WXF0 261 aaKnown RBP13□□□□□ -0.33
CLCNKA-203ENST00000439316 USP9XQ93008 2570 aaPredicted RBP13□□□□□ -0.33
CLCNKA-203ENST00000439316 NDUFB8O95169 186 aa13□□□□□ -0.33
CLCNKA-203ENST00000439316 FOXA3P55318 350 aaPredicted RBP13□□□□□ -0.33
CLCNKA-203ENST00000439316 TMEM190Q8WZ59 177 aa13□□□□□ -0.33
CLCNKA-203ENST00000439316 TMEM70Q9BUB7 260 aa13□□□□□ -0.33
CLCNKA-203ENST00000439316 FBXL15Q9H469 300 aa13□□□□□ -0.33
CLCNKA-203ENST00000439316 CLEC5AQ9NY25 188 aa13□□□□□ -0.33
CLCNKA-203ENST00000439316 DCHS2Q6V1P9 2916 aa12.99□□□□□ -0.33
CLCNKA-203ENST00000439316 CRXO43186 299 aaPredicted RBP12.99□□□□□ -0.33
CLCNKA-203ENST00000439316 IGLL1P15814 213 aa12.99□□□□□ -0.33
CLCNKA-203ENST00000439316 APOBEC3AP31941 199 aaPredicted RBP12.99□□□□□ -0.33
CLCNKA-203ENST00000439316 PRB3Q04118 309 aaPredicted RBP12.99□□□□□ -0.33
CLCNKA-203ENST00000439316 BBC3Q96PG8 261 aaPredicted RBP12.99□□□□□ -0.33
CLCNKA-203ENST00000439316 MALRD1Q5VYJ5 2156 aa12.99□□□□□ -0.33
CLCNKA-203ENST00000439316 LOC102724200A0A096LPH7 203 aaPredicted RBP12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 TRAV8-1A0A0A6YYK1 113 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 IGHV1-24A0A0C4DH33 117 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 SH2D7A6NKC9 451 aaPredicted RBP12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 APOHP02749 345 aaPredicted RBP12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 RBP4P02753 201 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 PRB1P04280 392 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 CYB5R2Q6BCY4 276 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 CIARTQ8N365 385 aaPredicted RBP12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 SRSF8Q9BRL6 282 aaKnown RBP12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 B9A039 149 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 M0QZ24 198 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 OVOL3O00110 214 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 HAX1O00165 279 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 CD24P25063 80 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 COL8A1P27658 744 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 GOLT1AQ6ZVE7 132 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 EXOC3-AS1Q8N2X6 119 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 RNF5Q99942 180 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 RASL11BQ9BPW5 248 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 NDFIP1Q9BT67 221 aa12.98□□□□□ -0.33
CLCNKA-203ENST00000439316 IGKV1-17P01599 117 aa12.97□□□□□ -0.33
CLCNKA-203ENST00000439316 COX7A1P24310 79 aa12.97□□□□□ -0.33
CLCNKA-203ENST00000439316 RPEQ96AT9 228 aa12.97□□□□□ -0.33
CLCNKA-203ENST00000439316 LY6LH3BQJ8 138 aa12.96□□□□□ -0.33
CLCNKA-203ENST00000439316 CHEK1O14757 476 aa12.96□□□□□ -0.33
CLCNKA-203ENST00000439316 Q71RC1 249 aaPredicted RBP12.96□□□□□ -0.33
CLCNKA-203ENST00000439316 PRNTQ86SH4 94 aa12.96□□□□□ -0.33
CLCNKA-203ENST00000439316 OR4F17Q8NGA8 305 aa12.96□□□□□ -0.33
CLCNKA-203ENST00000439316 SHANK2-AS3Q9BTD1 123 aa12.96□□□□□ -0.33
CLCNKA-203ENST00000439316 DOPEY1Q5JWR5 2465 aa12.96□□□□□ -0.34
CLCNKA-203ENST00000439316 ZNF785A8K8V0 405 aa12.96□□□□□ -0.34
CLCNKA-203ENST00000439316 H3BRN7 92 aa12.96□□□□□ -0.34
CLCNKA-203ENST00000439316 ZNF672Q499Z4 452 aaPredicted RBP12.96□□□□□ -0.34
CLCNKA-203ENST00000439316 DMRTA1Q5VZB9 504 aa12.96□□□□□ -0.34
CLCNKA-203ENST00000439316 TRBV19A0A075B6N1 114 aa12.95□□□□□ -0.34
CLCNKA-203ENST00000439316 OR4C46A6NHA9 309 aa12.95□□□□□ -0.34
CLCNKA-203ENST00000439316 SYS1-DBNDD2H3BUS1 97 aa12.95□□□□□ -0.34
CLCNKA-203ENST00000439316 K7EIM0 57 aa12.95□□□□□ -0.34
CLCNKA-203ENST00000439316 MUC15Q8N387 334 aa12.95□□□□□ -0.34
CLCNKA-203ENST00000439316 TMEM75Q8N9X5 138 aa12.95□□□□□ -0.34
CLCNKA-203ENST00000439316 PPIAL4CA0A0B4J2A2 164 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 LYNX1G3V0Z9 82 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 LEPROTL1O95214 131 aa12.94□□□□□ -0.34
CLCNKA-203ENST00000439316 PPIAL4GP0DN37 164 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms