RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 CSTL1Q9H114 145 aa8.45□□□□□ -1.06
COL28A1-203ENST00000435823 SLC25A32Q9H2D1 315 aa8.45□□□□□ -1.06
COL28A1-203ENST00000435823 WDR83OSQ9Y284 106 aa8.45□□□□□ -1.06
COL28A1-203ENST00000435823 NBEAL2Q6ZNJ1 2754 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 STAB2Q8WWQ8 2551 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 H0YIZ8 118 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 SPRY2O43597 315 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 COX7A2P2O60397 106 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 MPC2O95563 127 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 PSMB3P49720 205 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 RGS21Q2M5E4 152 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 DEFB135Q30KP9 77 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 Q6ZRG5 221 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 SHANK2-AS3Q9BTD1 123 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 MED28Q9H204 178 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 ARV1Q9H2C2 271 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 TP53TG1Q9Y2A0 90 aa8.44□□□□□ -1.06
COL28A1-203ENST00000435823 HUWE1Q7Z6Z7 4374 aaKnown RBP8.44□□□□□ -1.06
COL28A1-203ENST00000435823 TENM3Q9P273 2699 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 ELOA3CA0A087WX78 387 aaPredicted RBP8.43□□□□□ -1.06
COL28A1-203ENST00000435823 KNCNA6PVL3 124 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 ISLRO14498 428 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 RPL7P18124 248 aaKnown RBP8.43□□□□□ -1.06
COL28A1-203ENST00000435823 ATF4P18848 351 aaPredicted RBP8.43□□□□□ -1.06
COL28A1-203ENST00000435823 FGF7P21781 194 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 ACTL10Q5JWF8 245 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 OR5C1Q8NGR4 320 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 C16orf92Q96LL3 132 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 LINC00052Q96N35 136 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 UHRF2Q96PU4 802 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 KRTAP4-12Q9BQ66 201 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 OVOL2Q9BRP0 275 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 RSG1Q9BU20 258 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 SCRT1Q9BWW7 348 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 EDA2RQ9HAV5 297 aa8.43□□□□□ -1.06
COL28A1-203ENST00000435823 C3orf84H3BNL1 204 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 SOCS3O14543 225 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 MPDU1O75352 247 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 CA1P00915 261 aaPredicted RBP8.42□□□□□ -1.06
COL28A1-203ENST00000435823 SPP1P10451 314 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 NHLH2Q02577 135 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 TMEM41BQ5BJD5 291 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 C10orf113Q5VZT2 155 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 MIC13Q5XKP0 118 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 MORN3Q6PF18 240 aaPredicted RBP8.42□□□□□ -1.06
COL28A1-203ENST00000435823 PATE2Q6UY27 113 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 LINC00305Q7Z4B0 112 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 TRPT1Q86TN4 253 aaKnown RBP8.42□□□□□ -1.06
COL28A1-203ENST00000435823 OR1L4Q8NGR5 311 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 MUC7Q8TAX7 377 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 RNF183Q96D59 192 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 MBD2Q9UBB5 411 aa8.42□□□□□ -1.06
COL28A1-203ENST00000435823 RPL29P47914 159 aaKnown RBP8.41□□□□□ -1.06
COL28A1-203ENST00000435823 B2MP61769 119 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 FGL1Q08830 312 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 CLINT1Q14677 625 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 OPCMLQ14982 345 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 FCN2Q15485 313 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 THAP6Q8TBB0 222 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 GATAD1Q8WUU5 269 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 CHAC2Q8WUX2 184 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 PFDN5Q99471 154 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 RNF126Q9BV68 326 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 KRTAP9-9Q9BYP9 154 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 KRTAP9-4Q9BYQ2 154 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 DNAJC4Q9NNZ3 241 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 SLC39A9Q9NUM3 307 aa8.41□□□□□ -1.06
COL28A1-203ENST00000435823 CXCL3P19876 107 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 RPL12P30050 165 aaKnown RBP8.4□□□□□ -1.06
COL28A1-203ENST00000435823 NUTF2P61970 127 aaKnown RBP8.4□□□□□ -1.06
COL28A1-203ENST00000435823 SPATA31B1PQ5VZV4 182 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 EBLN2Q6P2I7 272 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 FOXI2Q6ZQN5 318 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 BPIFA4PQ86YQ2 179 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 ZNF709Q8N972 641 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 IL17DQ8TAD2 202 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 TMEM37Q8WXS4 190 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 NPCDR1Q9BY65 106 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 KCNIP2Q9NS61 270 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 RPRMQ9NS64 109 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 HSPB11Q9Y547 144 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 PXMP4Q9Y6I8 212 aa8.4□□□□□ -1.06
COL28A1-203ENST00000435823 A0A087X0K7 114 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 C17orf112F2Z3M2 114 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 H3BMM0 161 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 LYL1P12980 280 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 HLA-DRB4P13762 266 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 OXA1LQ15070 435 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 OR11H7Q8NGC8 314 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 LRRC20Q8TCA0 184 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 ASB13Q8WXK3 278 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 ATP5SQ99766 215 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 RARRES2Q99969 163 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 C1QTNF4Q9BXJ3 329 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 WDR61Q9GZS3 305 aaKnown RBP8.39□□□□□ -1.07
COL28A1-203ENST00000435823 SAV1Q9H4B6 383 aaPredicted RBP8.39□□□□□ -1.07
COL28A1-203ENST00000435823 HLA-DRB4X5D2U9 266 aa8.39□□□□□ -1.07
COL28A1-203ENST00000435823 AGRNO00468 2067 aa8.38□□□□□ -1.07
COL28A1-203ENST00000435823 IFNA5P01569 189 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms