RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 C10orf113Q5VZT2 155 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 LINC00305Q7Z4B0 112 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 KIR2DL5AQ8N109 375 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 KIR2DL5BQ8NHK3 375 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 C16orf92Q96LL3 132 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 GPR82Q96P67 336 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 SMIM3Q9BZL3 60 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 CSTL1Q9H114 145 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 HSPB11Q9Y547 144 aa13.74□□□□□ -0.21
SHH-203ENST00000435425 UBE2CO00762 179 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 ATF4P18848 351 aaPredicted RBP13.73□□□□□ -0.21
SHH-203ENST00000435425 DEFB1P60022 68 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 B2MP61769 119 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 PRR20EP86478 221 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 PRR20CP86479 221 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 PRR20DP86480 221 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 PRR20BP86481 221 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 PRR20AP86496 221 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 TMEM37Q8WXS4 190 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 OVOL2Q9BRP0 275 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 SLC39A9Q9NUM3 307 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 PXMP4Q9Y6I8 212 aa13.73□□□□□ -0.21
SHH-203ENST00000435425 SOCS3O14543 225 aa13.72□□□□□ -0.21
SHH-203ENST00000435425 SPRY2O43597 315 aa13.72□□□□□ -0.21
SHH-203ENST00000435425 RPL7P18124 248 aaKnown RBP13.72□□□□□ -0.21
SHH-203ENST00000435425 RPL29P47914 159 aaKnown RBP13.72□□□□□ -0.21
SHH-203ENST00000435425 PSMB3P49720 205 aa13.72□□□□□ -0.21
SHH-203ENST00000435425 MEOX2P50222 304 aa13.72□□□□□ -0.21
SHH-203ENST00000435425 NPCDR1Q9BY65 106 aa13.72□□□□□ -0.21
SHH-203ENST00000435425 SEPSECSQ9HD40 501 aaKnown RBP13.72□□□□□ -0.21
SHH-203ENST00000435425 DNAJC4Q9NNZ3 241 aa13.72□□□□□ -0.21
SHH-203ENST00000435425 ELOA3CA0A087WX78 387 aaPredicted RBP13.71□□□□□ -0.21
SHH-203ENST00000435425 MPDU1O75352 247 aa13.71□□□□□ -0.21
SHH-203ENST00000435425 CA1P00915 261 aaPredicted RBP13.71□□□□□ -0.21
SHH-203ENST00000435425 MORN5Q5VZ52 161 aa13.71□□□□□ -0.21
SHH-203ENST00000435425 IGFL4Q6B9Z1 124 aa13.71□□□□□ -0.21
SHH-203ENST00000435425 Q6ZWC4 215 aa13.71□□□□□ -0.21
SHH-203ENST00000435425 TRPT1Q86TN4 253 aaKnown RBP13.71□□□□□ -0.21
SHH-203ENST00000435425 OR1L4Q8NGR5 311 aa13.71□□□□□ -0.21
SHH-203ENST00000435425 C17orf77Q96MU5 243 aa13.71□□□□□ -0.21
SHH-203ENST00000435425 ISLRO14498 428 aa13.7□□□□□ -0.22
SHH-203ENST00000435425 SNRPCP09234 159 aaKnown RBP13.7□□□□□ -0.22
SHH-203ENST00000435425 LYL1P12980 280 aa13.7□□□□□ -0.22
SHH-203ENST00000435425 C20orf173Q96LM9 149 aa13.7□□□□□ -0.22
SHH-203ENST00000435425 PFDN5Q99471 154 aa13.7□□□□□ -0.22
SHH-203ENST00000435425 ATP5SQ99766 215 aa13.7□□□□□ -0.22
SHH-203ENST00000435425 WDR61Q9GZS3 305 aaKnown RBP13.7□□□□□ -0.22
SHH-203ENST00000435425 RNF24Q9Y225 148 aa13.7□□□□□ -0.22
SHH-203ENST00000435425 TENM3Q9P273 2699 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 TRAV5A0A0B4J249 113 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 IGKV3-20P01619 116 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 GIPP09681 153 aaPredicted RBP13.69□□□□□ -0.22
SHH-203ENST00000435425 Q5BKY6 102 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 ZNF709Q8N972 641 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 LRRC20Q8TCA0 184 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 CHAC2Q8WUX2 184 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 RNF183Q96D59 192 aa13.69□□□□□ -0.22
SHH-203ENST00000435425 NBEAL2Q6ZNJ1 2754 aa13.68□□□□□ -0.22
SHH-203ENST00000435425 F6UB75 175 aa13.68□□□□□ -0.22
SHH-203ENST00000435425 IFNA5P01569 189 aa13.68□□□□□ -0.22
SHH-203ENST00000435425 GDF5OSQ5U4N7 250 aa13.68□□□□□ -0.22
SHH-203ENST00000435425 SAMD13Q5VXD3 122 aa13.68□□□□□ -0.22
SHH-203ENST00000435425 SCGB1C1Q8TD33 95 aa13.68□□□□□ -0.22
SHH-203ENST00000435425 EDA2RQ9HAV5 297 aa13.68□□□□□ -0.22
SHH-203ENST00000435425 C17orf112F2Z3M2 114 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 H3BMM0 161 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 H3BTX0 84 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 GCSAMLQ5JQS6 135 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 MORN3Q6PF18 240 aaPredicted RBP13.67□□□□□ -0.22
SHH-203ENST00000435425 BPIFA4PQ86YQ2 179 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 RNF182Q8N6D2 247 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 SAV1Q9H4B6 383 aaPredicted RBP13.67□□□□□ -0.22
SHH-203ENST00000435425 WFDC1Q9HC57 220 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 RPRMQ9NS64 109 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 TP53TG1Q9Y2A0 90 aa13.67□□□□□ -0.22
SHH-203ENST00000435425 A0A087X0K7 114 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 TRAV8-2A0A0B4J237 113 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 MRPS12O15235 138 aaKnown RBP13.66□□□□□ -0.22
SHH-203ENST00000435425 SPP1P10451 314 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 C4BPBP20851 252 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 HLA-DMBP28068 263 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 EBLN2Q6P2I7 272 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 OR4B1Q8NGF8 309 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 GATAD1Q8WUU5 269 aa13.66□□□□□ -0.22
SHH-203ENST00000435425 PRB4P10163 310 aaPredicted RBP13.65□□□□□ -0.22
SHH-203ENST00000435425 HLA-DRB4P13762 266 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 FXYD7P58549 80 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 FAM78BQ5VT40 261 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 FOXI2Q6ZQN5 318 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 MUC7Q8TAX7 377 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 ASB13Q8WXK3 278 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 KCNIP2Q9NS61 270 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 CLEC5AQ9NY25 188 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 HLA-DRB4X5D2U9 266 aa13.65□□□□□ -0.22
SHH-203ENST00000435425 FXYD6-FXYD2A0A087WZ82 144 aa13.64□□□□□ -0.23
SHH-203ENST00000435425 GIG44P09565 113 aaPredicted RBP13.64□□□□□ -0.23
SHH-203ENST00000435425 ZNF738Q8NE65 137 aa13.64□□□□□ -0.23
SHH-203ENST00000435425 OR2T35Q8NGX2 323 aa13.64□□□□□ -0.23
SHH-203ENST00000435425 RARRES2Q99969 163 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms