RNA–Protein interactions for RNA: ENST00000434233.2

LINC00339-204, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best)

Gene LINC00339, Length 929 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-204ENST00000434233 WIPF1O43516 503 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 IGLL1P15814 213 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 RPL7P18124 248 aaKnown RBP9.3□□□□□ -0.92
LINC00339-204ENST00000434233 SULT1A2P50226 295 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 RAB5CP51148 216 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 MORN5Q5VZ52 161 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 FAM122CQ6P4D5 195 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 DPPA3Q6W0C5 159 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 TCF24Q7RTU0 167 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 BPIFA4PQ86YQ2 179 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 SCRT1Q9BWW7 348 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 SLC25A22Q9H936 323 aa9.3□□□□□ -0.92
LINC00339-204ENST00000434233 CDC34P49427 236 aaPredicted RBP9.29□□□□□ -0.92
LINC00339-204ENST00000434233 TAS2R45P59539 299 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 CD300EQ496F6 205 aaPredicted RBP9.29□□□□□ -0.92
LINC00339-204ENST00000434233 SPATA31B1PQ5VZV4 182 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 LEMD1Q68G75 181 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 SIGLEC15Q6ZMC9 328 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 RBPMS2Q6ZRY4 209 aaKnown RBP9.29□□□□□ -0.92
LINC00339-204ENST00000434233 MIR17HGQ75NE6 70 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 STXBP6Q8NFX7 210 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 RAB24Q969Q5 203 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 FAM167A-AS1Q96KT0 104 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 TMEM14CQ9P0S9 112 aa9.29□□□□□ -0.92
LINC00339-204ENST00000434233 CTXND1A0A1B0GTU2 59 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 TSPAN4O14817 238 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 MRPS12O15235 138 aaKnown RBP9.28□□□□□ -0.92
LINC00339-204ENST00000434233 STAG3L2P0CL84 134 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 STAG3L3P0CL85 134 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 GALR1P47211 349 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 PAFAH1B2P68402 229 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 SLC25A2Q9BXI2 301 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 OR51M1Q9H341 326 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 SMAD5-AS1Q9Y6J3 95 aa9.28□□□□□ -0.92
LINC00339-204ENST00000434233 ZNF785A8K8V0 405 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 RPL11P62913 178 aaKnown RBP9.27□□□□□ -0.93
LINC00339-204ENST00000434233 ZNF726P1Q15940 193 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 KHDC3LQ587J8 217 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 LCN12Q6JVE5 192 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 TEX261Q6UWH6 196 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 ALKAL2Q6UX46 152 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 PQLC2Q6ZP29 291 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 RNF141Q8WVD5 230 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 MBD3L1Q8WWY6 194 aa9.27□□□□□ -0.93
LINC00339-204ENST00000434233 A0A087X0K7 114 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 TRAV2A0A0B4J234 112 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 HIST1H1EP10412 219 aaKnown RBP9.26□□□□□ -0.93
LINC00339-204ENST00000434233 ATF4P18848 351 aaPredicted RBP9.26□□□□□ -0.93
LINC00339-204ENST00000434233 MEOX2P50222 304 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 OXLD1Q5BKU9 147 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 TMEM61Q8N0U2 210 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 ZNF503Q96F45 646 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 SPAG8Q99932 426 aaPredicted RBP9.26□□□□□ -0.93
LINC00339-204ENST00000434233 PAXXQ9BUH6 204 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 ZMAT5Q9UDW3 170 aaKnown RBP9.26□□□□□ -0.93
LINC00339-204ENST00000434233 SELENOKQ9Y6D0 94 aa9.26□□□□□ -0.93
LINC00339-204ENST00000434233 IZUMO1RA6ND01 250 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 DNASE2O00115 360 aaPredicted RBP9.25□□□□□ -0.93
LINC00339-204ENST00000434233 CXorf1O96002 111 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 IFNA7P01567 189 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 H2AFB1P0C5Y9 115 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 IGLC2P0DOY2 106 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 GP9P14770 177 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 FHITP49789 147 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 GUK1Q16774 197 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 SAMD5Q5TGI4 173 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 SSX7Q7RTT5 188 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 ZNF680Q8NEM1 530 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 FAM213BQ8TBF2 198 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 LRRC20Q8TCA0 184 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 C17orf77Q96MU5 243 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 MS4A6AQ9H2W1 248 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 HRH4Q9H3N8 390 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 NRN1Q9NPD7 142 aa9.25□□□□□ -0.93
LINC00339-204ENST00000434233 TRRAPQ9Y4A5 3859 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 IGKV3-7A0A075B6H7 116 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 H3BQ15 152 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 K7EQG2 157 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 HMGB3O15347 200 aaKnown RBP9.24□□□□□ -0.93
LINC00339-204ENST00000434233 OR7C2O60412 319 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 EIF3GO75821 320 aaKnown RBP eCLIP9.24□□□□□ -0.93
LINC00339-204ENST00000434233 NBEAP1P0C6P0 100 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 PYYP10082 97 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 CMC4P56277 68 aaPredicted RBP9.24□□□□□ -0.93
LINC00339-204ENST00000434233 BLOC1S1P78537 153 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 EGFEM1PQ0D2K5 195 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 FAM74A1Q5RGS3 127 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 SAMD13Q5VXD3 122 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 LCN15Q6UWW0 184 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 SUN5Q8TC36 379 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 DCANP1Q8TF63 244 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 FXYD5Q96DB9 178 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 SAT2Q96F10 170 aaPredicted RBP9.24□□□□□ -0.93
LINC00339-204ENST00000434233 ZNF586Q9NXT0 402 aa9.24□□□□□ -0.93
LINC00339-204ENST00000434233 TRBV19A0A075B6N1 114 aa9.23□□□□□ -0.93
LINC00339-204ENST00000434233 TRAV1-1A0A0B4J248 108 aa9.23□□□□□ -0.93
LINC00339-204ENST00000434233 MAP1LC3B2A6NCE7 125 aa9.23□□□□□ -0.93
LINC00339-204ENST00000434233 OR4C46A6NHA9 309 aa9.23□□□□□ -0.93
LINC00339-204ENST00000434233 ZNF705EA8MWA4 302 aaPredicted RBP9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 141.4 ms