RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SH3BGRL3Q9H299 93 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 PARVBQ9HBI1 364 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 SLC39A9Q9NUM3 307 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 TIMM22Q9Y584 194 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 CACNA1EQ15878 2313 aa1.94□□□□□ -2.1
USP40-204ENST00000427947 ARHGEF5Q12774 1597 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 IQGAP1P46940 1657 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 DAPK1P53355 1430 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 MYOM3Q5VTT5 1437 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 TRAV41A0A0B4J266 112 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 TRAV4A0A0B4J268 109 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 A0A1B0GU33 70 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 C11orf86A6NJI1 115 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 SIGLEC16A6NMB1 481 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 RIIAD1A6NNX1 92 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 FABP5P3A8MUU1 101 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 TRAPPC2LH3BP13 241 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 H3BPC8 53 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 CYB5BO43169 146 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 PSCAO43653 123 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 OR2J2O76002 312 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 CPSF4O95639 269 aaKnown RBP1.93□□□□□ -2.1
USP40-204ENST00000427947 IFNA14P01570 189 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 APOA2P02652 100 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 LGALS1P09382 135 aaKnown RBP1.93□□□□□ -2.1
USP40-204ENST00000427947 MIAQ16674 131 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.93□□□□□ -2.1
USP40-204ENST00000427947 CROCCP2Q86T23 111 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 KRTAP13-1Q8IUC0 172 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 OR51T1Q8NGJ9 327 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 OR10D4PQ8NGN7 298 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 OR13D1Q8NGV5 346 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 CLDND2Q8NHS1 167 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 SMCR5Q8TEV8 140 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 MBD3L1Q8WWY6 194 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 LYSMD1Q96S90 227 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 IMMP2LQ96T52 175 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 AIF1LQ9BQI0 150 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 OR8D2Q9GZM6 311 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 C20orf27Q9GZN8 174 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 XAGE1AQ9HD64 81 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 UBR1Q8IWV7 1749 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 TRPM3Q9HCF6 1732 aaPredicted RBP1.93□□□□□ -2.1
USP40-204ENST00000427947 COL5A1P20908 1838 aaPredicted RBP1.93□□□□□ -2.1
USP40-204ENST00000427947 MAST1Q9Y2H9 1570 aa1.93□□□□□ -2.1
USP40-204ENST00000427947 PRKDCP78527 4128 aaKnown RBP1.93□□□□□ -2.1
USP40-204ENST00000427947 SPATA31E1Q6ZUB1 1445 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 DUOX2Q9NRD8 1548 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 PIK3C2BO00750 1634 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 TRBV19A0A075B6N1 114 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 FUOMA2VDF0 154 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 TMEM235A6NFC5 223 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 IGHV3-7P01780 117 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 PPBPP02775 128 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 HRES1P13985 223 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 CBR1P16152 277 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 SRIP30626 198 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 G6PCP35575 357 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 EMP1P54849 157 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 RAB4BP61018 213 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 HIST1H4AP62805 103 aaKnown RBP1.92□□□□□ -2.1
USP40-204ENST00000427947 SPANXN3Q5MJ09 141 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 SAMD13Q5VXD3 122 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 EXOC3-AS1Q8N2X6 119 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 C12orf45Q8N5I9 185 aaPredicted RBP1.92□□□□□ -2.1
USP40-204ENST00000427947 OR52R1Q8NGF1 315 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 MALSU1Q96EH3 234 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 C2orf50Q96LR7 162 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 SERPINI1Q99574 410 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 CHST6Q9GZX3 395 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 AICDAQ9GZX7 198 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 PCTPQ9UKL6 214 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 ERGIC3Q9Y282 383 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 AMMECR1Q9Y4X0 333 aaPredicted RBP1.92□□□□□ -2.1
USP40-204ENST00000427947 RBM7Q9Y580 266 aaKnown RBP1.92□□□□□ -2.1
USP40-204ENST00000427947 TIMM9Q9Y5J7 89 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 HSPE1-MOB4S4R3N1 261 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 ASXL3Q9C0F0 2248 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 NRXN1Q9ULB1 1477 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 CROCC2H7BZ55 1655 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 TNRC6CQ9HCJ0 1690 aaKnown RBP1.92□□□□□ -2.1
USP40-204ENST00000427947 USH2AO75445 5202 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 TECTAO75443 2155 aa1.92□□□□□ -2.1
USP40-204ENST00000427947 ERBINQ96RT1 1412 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 ANKRD50Q9ULJ7 1429 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 NCOA3Q9Y6Q9 1424 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 LMTK2Q8IWU2 1503 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 CEP152O94986 1710 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 POLR1AO95602 1720 aaPredicted RBP1.91□□□□□ -2.1
USP40-204ENST00000427947 GCC2Q8IWJ2 1684 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 C1orf167Q5SNV9 1468 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 TRAV38-1A0A0B4J264 116 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 A0A0J9YW62 118 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 A0A0J9YX75 114 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 IRGMA1A4Y4 181 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 BUB1B-PAK6H3BSN5 160 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 SLC22A1O15245 554 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 ZNF73O43830 326 aaPredicted RBP1.91□□□□□ -2.1
USP40-204ENST00000427947 DEFA4P12838 97 aa1.91□□□□□ -2.1
USP40-204ENST00000427947 GZMHP20718 246 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms