RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 BET1LQ9NYM9 111 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 MRPL36Q9P0J6 103 aaKnown RBP1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 HIGD1AQ9Y241 93 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 CLDN16Q9Y5I7 305 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 NOTCH4Q99466 2003 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 IGLV8-61A0A075B6I0 122 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A087WTM6 91 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM90A16PA6NEW6 464 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM90A8PA6NJQ4 464 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 G3V2L1 256 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 P2RY4P51582 365 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 RGS21Q2M5E4 152 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 SCGB2B2Q4G0G5 96 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 SMUG1Q53HV7 270 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 MEIG1Q5JSS6 88 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 S100A7L2Q5SY68 101 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM162BQ5T6X4 162 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 WDR82Q6UXN9 313 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 DPY19L2P2Q6ZN68 376 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 C11orf53Q8IXP5 236 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 LYPD1Q8N2G4 141 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 OR5AK2Q8NH90 309 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 ATP6V1G3Q96LB4 118 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 TREX2Q9BQ50 279 aaPredicted RBP1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 C12orf10Q9HB07 376 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 KAAG1Q9UBP8 84 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 RAB26Q9ULW5 256 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 APCP25054 2843 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 LAMB4A4D0S4 1761 aa1.99□□□□□ -2.09
CCDC88A-205ENST00000426576 ATG2AQ2TAZ0 1938 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 TRBV2A0A0J9YWF9 115 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 TCL1BO95988 128 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF735P0CB33 412 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 RPS27AP62979 156 aaKnown RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 SUPT4H1P63272 117 aaKnown RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 PAX2Q02962 417 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 GAGE6Q13070 117 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 SPANXN4Q5MJ08 99 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 FAM78BQ5VT40 261 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 C10orf99Q6UWK7 81 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 IDO2Q6ZQW0 420 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 LINC00469Q8N7U9 141 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 LINC00304Q8N9R0 145 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNRF4Q8WWF5 429 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 S100ZQ8WXG8 99 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF75CPQ92670 426 aaPredicted RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 WFDC6Q9BQY6 131 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 CHAC1Q9BUX1 264 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 YIPF3Q9GZM5 350 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 WDR61Q9GZS3 305 aaKnown RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 NUDT15Q9NV35 164 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 SMPXQ9UHP9 88 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 TNFSF18Q9UNG2 199 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 SAR1BQ9Y6B6 198 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 DCHS2Q6V1P9 2916 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 TRBV4-1A0A0J9YWV2 114 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF701M0R085 212 aaPredicted RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 UBBP0CG47 229 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ARL14EPLP0DKL9 152 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 SLC25A4P12235 298 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 PMCHP20382 165 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 GLYATL3Q5SZD4 288 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 FOXI2Q6ZQN5 318 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 SAXO1Q8IYX7 474 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 C5orf56Q8N8D9 126 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 OR2D3Q8NGH3 330 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 OR10G9Q8NGN4 311 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF479Q96JC4 524 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 C19orf43Q9BQ61 176 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 TM2D1Q9BX74 207 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 MRPL32Q9BYC8 188 aaKnown RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 KRTAP4-5Q9BYR2 181 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 PKIBQ9C010 78 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 DNAH1Q9P2D7 4330 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 WNK3Q9BYP7 1800 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 TGP01266 2768 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 IGHV7-4-1A0A0J9YVY3 117 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZAR1LA6NP61 321 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZNF737O75373 536 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 FGF6P10767 208 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 HTR1FP30939 366 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 RND3P61587 244 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ZDHHC24Q6UX98 284 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 OR10G8Q8NGN5 311 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 CARD19Q96LW7 228 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 CIB3Q96Q77 187 aaPredicted RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 C20orf27Q9GZN8 174 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 C20orf141Q9NUB4 165 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 BLOC1S6Q9UL45 172 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 F11RQ9Y624 299 aaKnown RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 A0A0B4J2A0 478 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 CENPXA8MT69 81 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 HYPMO75409 117 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 FLI1Q01543 452 aaPredicted RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 C1orf100Q5SVJ3 147 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 IBA57Q5T440 356 aaKnown RBP1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 OTPQ5XKR4 325 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 OR51G1Q8NGK1 321 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 ABHD14BQ96IU4 210 aa1.98□□□□□ -2.09
CCDC88A-205ENST00000426576 LITAFQ99732 161 aa1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms