RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 MT-CO2P00403 227 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 IFNA21P01568 189 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 IGLV1-51P01701 117 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 C4BPBP20851 252 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 SYNJ2BPP57105 145 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 CYCSP99999 105 aaKnown RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 DEFA5Q01523 94 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 TNFRSF9Q07011 255 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 DHRS2Q13268 280 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 BSXQ3C1V8 233 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 ANKRD55Q3KP44 614 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 IL34Q6ZMJ4 242 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 GTSCR1Q86UQ5 136 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 DUSP18Q8NEJ0 188 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 OR2K2Q8NGT1 345 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 OR1S1Q8NH92 325 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 RNASEH2CQ8TDP1 164 aaKnown RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 MARC2Q969Z3 335 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 TECRQ9NZ01 308 aaKnown RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 FLVCR2Q9UPI3 526 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF256Q9Y2P7 627 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 S4R3C0 116 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 MGAM2Q2M2H8 2515 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 A8MWP6 167 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 PPP5D1E7EU14 171 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 NDUFA4O00483 81 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 NUPL2O15504 423 aaKnown RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 SCGB2A1O75556 95 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 TMEM50AO95807 157 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 IFNA10P01566 189 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 IGHV3-23P01764 117 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 IL5P05113 134 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 CTSGP08311 255 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 C8orf88P0DMB2 117 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 SLC25A4P12235 298 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 FOLR2P14207 255 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 GPR183P32249 361 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 GPX4P36969 197 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 DEFA1P59665 94 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 DEFA3P59666 94 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 LRRC37A5PQ49AS3 106 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 Q56UQ5 140 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 SPINK9Q5DT21 86 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 ETFRF1Q6IPR1 90 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 C12orf45Q8N5I9 185 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 DTD1Q8TEA8 209 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF431Q8TF32 576 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 MITD1Q8WV92 249 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 CIB3Q96Q77 187 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF436Q9C0F3 470 aaPredicted RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 C20orf85Q9H1P6 137 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 RBKSQ9H477 322 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 MRPL27Q9P0M9 148 aaKnown RBP1.85□□□□□ -2.11
VPS13A-208ENST00000423463 UFC1Q9Y3C8 167 aa1.85□□□□□ -2.11
VPS13A-208ENST00000423463 TRAV6A0A075B6T7 132 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 IGHV3-21A0A0B4J1V1 117 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 TRAV25A0A0B4J276 109 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 OR2T8A6NH00 312 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 C2orf70A6NJV1 201 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 K7EIL1 84 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 SYNGR2O43760 224 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 GNG7O60262 68 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 GP9P14770 177 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 SPNP16150 400 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 CBLN1P23435 193 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 NPY1RP25929 384 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 RAB11AP62491 216 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 IFITM3Q01628 133 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 DEFB114Q30KQ6 69 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 DEFB121Q5J5C9 76 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 LCN12Q6JVE5 192 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 ZNF600Q6ZNG1 722 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 OR4X1Q8NH49 305 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 ENKURQ8TC29 256 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 MRAPQ8TCY5 172 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 CACNG8Q8WXS5 425 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 PINX1Q96BK5 328 aaKnown RBP1.84□□□□□ -2.11
VPS13A-208ENST00000423463 CHRDL1Q9BU40 450 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 GPN1Q9HCN4 374 aaPredicted RBP1.84□□□□□ -2.11
VPS13A-208ENST00000423463 NUDT15Q9NV35 164 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 UBQLN2Q9UHD9 624 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 TBC1D24Q9ULP9 559 aa1.84□□□□□ -2.11
VPS13A-208ENST00000423463 WI2-2373I1.2A0A1W2PRP0 233 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 TMEM213A2RRL7 107 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 SNRPGP15A8MWD9 76 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 INMT-MINDY4F8WBC2 141 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 WRBO00258 174 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 CCSO14618 274 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 ADAP1O75689 374 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 PRB2P02812 416 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-208ENST00000423463 IFNA4P05014 189 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 CD5P06127 495 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 BMI1P35226 326 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 OPRK1P41145 380 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 TAS2R30P59541 319 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 YPEL3P61236 119 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-208ENST00000423463 IAH1Q2TAA2 248 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-208ENST00000423463 LAMTOR1Q6IAA8 161 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 PRSS54Q6PEW0 395 aa1.84□□□□□ -2.12
VPS13A-208ENST00000423463 UNQ9165/PRO28630Q6UXU0 137 aa1.84□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms