RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 HAGHQ16775 308 aa9.25□□□□□ -0.93
SKA1-203ENST00000417656 PXDC1Q5TGL8 231 aa9.25□□□□□ -0.93
SKA1-203ENST00000417656 CHAC2Q8WUX2 184 aa9.25□□□□□ -0.93
SKA1-203ENST00000417656 WDR61Q9GZS3 305 aaKnown RBP9.25□□□□□ -0.93
SKA1-203ENST00000417656 SLC39A9Q9NUM3 307 aa9.25□□□□□ -0.93
SKA1-203ENST00000417656 FXYD6-FXYD2A0A087WZ82 144 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 G3V3Q6 166 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 GALR1P47211 349 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 RPL29P47914 159 aaKnown RBP9.24□□□□□ -0.93
SKA1-203ENST00000417656 CMC4P56277 68 aaPredicted RBP9.24□□□□□ -0.93
SKA1-203ENST00000417656 PSMG4Q5JS54 123 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 MORN5Q5VZ52 161 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 LINC00305Q7Z4B0 112 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 TMEM37Q8WXS4 190 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 WFDC1Q9HC57 220 aa9.24□□□□□ -0.93
SKA1-203ENST00000417656 COL7A1Q02388 2944 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 LOC102724200A0A096LPH7 203 aaPredicted RBP9.23□□□□□ -0.93
SKA1-203ENST00000417656 SMLR1H3BR10 107 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 SOCS3O14543 225 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 RPL35AP18077 110 aaKnown RBP9.23□□□□□ -0.93
SKA1-203ENST00000417656 C10orf113Q5VZT2 155 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 Q6ZRG5 221 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 C17orf77Q96MU5 243 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 GPR82Q96P67 336 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 AQP10Q96PS8 301 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 PFDN5Q99471 154 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 TM2D3Q9BRN9 247 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 RSG1Q9BU20 258 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 RETNQ9HD89 108 aa9.23□□□□□ -0.93
SKA1-203ENST00000417656 HUWE1Q7Z6Z7 4374 aaKnown RBP9.22□□□□□ -0.93
SKA1-203ENST00000417656 ELOA3CA0A087WX78 387 aaPredicted RBP9.22□□□□□ -0.93
SKA1-203ENST00000417656 RNF222A6NCQ9 220 aa9.22□□□□□ -0.93
SKA1-203ENST00000417656 KNCNA6PVL3 124 aa9.22□□□□□ -0.93
SKA1-203ENST00000417656 IFNA5P01569 189 aa9.22□□□□□ -0.93
SKA1-203ENST00000417656 NHLRC4P0CG21 123 aaPredicted RBP9.22□□□□□ -0.93
SKA1-203ENST00000417656 RPL7P18124 248 aaKnown RBP9.22□□□□□ -0.93
SKA1-203ENST00000417656 ATF4P18848 351 aaPredicted RBP9.22□□□□□ -0.93
SKA1-203ENST00000417656 SNRPD3P62318 126 aaKnown RBP9.22□□□□□ -0.93
SKA1-203ENST00000417656 GCSAMLQ5JQS6 135 aa9.22□□□□□ -0.93
SKA1-203ENST00000417656 S100A7AQ86SG5 101 aa9.22□□□□□ -0.93
SKA1-203ENST00000417656 OR1L4Q8NGR5 311 aa9.22□□□□□ -0.93
SKA1-203ENST00000417656 KCNIP2Q9NS61 270 aa9.22□□□□□ -0.93
SKA1-203ENST00000417656 C17orf112F2Z3M2 114 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 PSMB3P49720 205 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 MEOX2P50222 304 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 ZNF709Q8N972 641 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 SCGB1C1Q8TD33 95 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 RCHY1Q96PM5 261 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 SPATA25Q9BR10 227 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 ZMAT4Q9H898 229 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 DNAJC4Q9NNZ3 241 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 TNFSF18Q9UNG2 199 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 U3KQK5 164 aa9.21□□□□□ -0.94
SKA1-203ENST00000417656 A0A087X0K7 114 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 TRAV5A0A0B4J249 113 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 MRPS12O15235 138 aaKnown RBP9.2□□□□□ -0.94
SKA1-203ENST00000417656 ID1P41134 155 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 APOC4P55056 127 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 DEFB1P60022 68 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 ACTL10Q5JWF8 245 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 Q6ZNX1 250 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 INO80EQ8NBZ0 244 aaPredicted RBP9.2□□□□□ -0.94
SKA1-203ENST00000417656 GATAD1Q8WUU5 269 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 C16orf92Q96LL3 132 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 LINC00052Q96N35 136 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 PARD6GQ9BYG4 376 aaPredicted RBP9.2□□□□□ -0.94
SKA1-203ENST00000417656 SEPSECSQ9HD40 501 aaKnown RBP9.2□□□□□ -0.94
SKA1-203ENST00000417656 RNF24Q9Y225 148 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 RFNGQ9Y644 331 aa9.2□□□□□ -0.94
SKA1-203ENST00000417656 ISLRO14498 428 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 ARPC5O15511 151 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 SNRPCP09234 159 aaKnown RBP9.19□□□□□ -0.94
SKA1-203ENST00000417656 FFAR4Q5NUL3 377 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 SAMD13Q5VXD3 122 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 SPATA31B1PQ5VZV4 182 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 IGFL4Q6B9Z1 124 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 TRPT1Q86TN4 253 aaKnown RBP9.19□□□□□ -0.94
SKA1-203ENST00000417656 STHQ8IWL8 128 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 C20orf173Q96LM9 149 aa9.19□□□□□ -0.94
SKA1-203ENST00000417656 TENM3Q9P273 2699 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 hCG_2014768A0A024R1R8 64 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 TRAV8-2A0A0B4J237 113 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 H3BTX0 84 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 AGRNO00468 2067 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 ZNF266Q14584 549 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 DEFB135Q30KP9 77 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 FAM78BQ5VT40 261 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 MIR17HGQ75NE6 70 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 BPIFA4PQ86YQ2 179 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 RNF182Q8N6D2 247 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 HSD17B11Q8NBQ5 300 aa9.18□□□□□ -0.94
SKA1-203ENST00000417656 KIR2DL5BA0A0G2JN68 375 aa9.17□□□□□ -0.94
SKA1-203ENST00000417656 KIR2DL5BA0A0G2JPC4 375 aa9.17□□□□□ -0.94
SKA1-203ENST00000417656 F6UB75 175 aa9.17□□□□□ -0.94
SKA1-203ENST00000417656 SLC17A3O00476 420 aa9.17□□□□□ -0.94
SKA1-203ENST00000417656 IGLC2P0DOY2 106 aa9.17□□□□□ -0.94
SKA1-203ENST00000417656 HLA-DMBP28068 263 aa9.17□□□□□ -0.94
SKA1-203ENST00000417656 GDF5OSQ5U4N7 250 aa9.17□□□□□ -0.94
SKA1-203ENST00000417656 LCN15Q6UWW0 184 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms