RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 FGF6P10767 208 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 RTBDNQ9BSG5 229 aaPredicted RBP11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 IGLV1-36A0A0B4J1U3 117 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 F6UB75 175 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 PRCDQ00LT1 54 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 LYZL1Q6UWQ5 148 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 PLA2G2FQ9BZM2 168 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 FUSP35637 526 aaKnown RBP eCLIP11.07□□□□□ -0.642e-9■□□□□ 9.5
CCDC88A-204ENST00000413716 CD200R1LQ6Q8B3 271 aa11.07□□□□□ -0.64
CCDC88A-204ENST00000413716 NHSL1Q5SYE7 1610 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 RLFQ13129 1914 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 TMEM14DPA8MWL7 114 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 PEBP1P30086 187 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 LCTP09848 1927 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 FAM231BA6NCW3 169 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 SLAQ13239 276 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 CRYBA4P53673 196 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 ATRAIDQ6UW56 229 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 CARD19Q96LW7 228 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 TRBV7-1A0A0A6YYK4 115 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 PRB1P04280 392 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 CRYBA2P53672 197 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 BRK1Q8WUW1 75 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 ZNF138P52744 262 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 STPG4Q8N801 248 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 CISD3P0C7P0 127 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 RPL35AP18077 110 aaKnown RBP11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 TAL2Q16559 108 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 SRXN1Q9BYN0 137 aa11.06□□□□□ -0.64
CCDC88A-204ENST00000413716 KLF5Q13887 457 aaPredicted RBP11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 SMIM2Q9BVW6 85 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 A0A1W2PR77 199 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 F8VVB4 439 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 F8VWA3 439 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 ZC2HC1BQ5TFG8 222 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 ZNF319Q9P2F9 582 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 FXYD7P58549 80 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 PKIGQ9Y2B9 76 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 C14orf178Q8N769 122 aaPredicted RBP11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 SLC25A28Q96A46 364 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 LINC00477Q96M19 166 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 TRBV24-1A0A075B6N3 115 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 RPL15P61313 204 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 TRPT1Q86TN4 253 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 VSIRQ9H7M9 311 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 A0A0A6YYD4 124 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 C15orf32Q32M92 178 aa11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 SUPT4H1P63272 117 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-204ENST00000413716 LCN12Q6JVE5 192 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 EXOC3-AS1Q8N2X6 119 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 HLA-DMBP28068 263 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 MALRD1Q5VYJ5 2156 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 SH2D1AO60880 128 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 IGHV3-53P01767 116 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 RMI2Q96E14 147 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 TRBV25-1A0A075B6N4 114 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 LIMS2Q7Z4I7 341 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 PRB2P02812 416 aaPredicted RBP11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 FBLIM1Q8WUP2 373 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 K7EP13 123 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 K7ERS5 55 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 YPEL1O60688 119 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 DEFB104AQ8WTQ1 72 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 YPEL2Q96QA6 119 aa11.04□□□□□ -0.64
CCDC88A-204ENST00000413716 PRR19A6NJB7 356 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 PMS2P5A8MQ11 134 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 K7EP34 96 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 RHODO00212 210 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 SRSF3P84103 164 aaKnown RBP11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 OR11H6Q8NGC7 330 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 ORMDL1Q9P0S3 153 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 PLXNB3Q9ULL4 1909 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 PFN2P35080 140 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 CXCL10P02778 98 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 MPZP25189 248 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 FAM166AQ6J272 317 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 TINCRA0A1B0GVN0 87 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 CFHR2P36980 270 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 AMELYQ99218 206 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 KLHDC3Q9BQ90 382 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 TRBV5-3A0A0A0MS03 114 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 CD55P08174 381 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 CLPSP04118 112 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 DEFB121Q5J5C9 76 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 TMEM133Q9H2Q1 129 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 FAM104BQ5XKR9 115 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 LINC01465Q8N7H1 131 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 SORL1Q92673 2214 aa11.03□□□□□ -0.64
CCDC88A-204ENST00000413716 A8MWP6 167 aa11.02□□□□□ -0.64
CCDC88A-204ENST00000413716 SPAARA0A1B0GVQ0 90 aa11.02□□□□□ -0.64
CCDC88A-204ENST00000413716 FOXL2P58012 376 aa11.02□□□□□ -0.64
CCDC88A-204ENST00000413716 LINC01560Q8TB33 94 aa11.02□□□□□ -0.64
CCDC88A-204ENST00000413716 GFRA4Q9GZZ7 299 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 ANAPC1Q9H1A4 1944 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 TICRRQ7Z2Z1 1910 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 ACYP1P07311 99 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 REPIN1Q9BWE0 567 aaKnown RBP11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 USF3Q68DE3 2245 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 CENPVL1A0A0U1RR11 272 aa11.02□□□□□ -0.65
CCDC88A-204ENST00000413716 CXCL1P09341 107 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 334.2 ms