RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 ZNF474Q6S9Z5 364 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-210ENST00000409694 FAM216BQ8N7L0 139 aa6.51□□□□□ -1.37
SYNE1-210ENST00000409694 A0A0G2JMZ2 1700 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 LRRC37A2A6NM11 1700 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 LRRC37AA6NMS7 1700 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 M0R1W7 72 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 ZNF883P0CG24 379 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 CEACAM1P13688 526 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 HAMPP81172 84 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 C3orf36Q3SXR2 165 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 SAP25Q8TEE9 199 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 SPTBN1Q01082 2364 aaKnown RBP6.5□□□□□ -1.37
SYNE1-210ENST00000409694 ANKRD29Q8N6D5 301 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 POLEQ07864 2286 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 A0A1B0GTI1 187 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 A0A1W2PPI3 338 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 IGLV3-21P80748 117 aaPredicted RBP6.5□□□□□ -1.37
SYNE1-210ENST00000409694 LCN12Q6JVE5 192 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 FRMPD3Q5JV73 1810 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 NRXN2Q9P2S2 1712 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 SHISA9B4DS77 424 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 TCF15Q12870 199 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 IGHV1-24A0A0C4DH33 117 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 CEP250Q9BV73 2442 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 HELZP42694 1942 aaKnown RBP6.5□□□□□ -1.37
SYNE1-210ENST00000409694 TRAV13-1A0A0B4J241 112 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 C9orf118A6NHY6 69 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 HLA-DMBP28068 263 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 LIME1Q9H400 295 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 CRIM1Q9NZV1 1036 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 A0A1B0GWJ7 208 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 CDCP2Q5VXM1 449 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 SPSB2Q99619 263 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 CEP290O15078 2479 aa6.5□□□□□ -1.37
SYNE1-210ENST00000409694 TBX6O95947 436 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-210ENST00000409694 GATA2P23769 480 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-210ENST00000409694 TMEM131Q92545 1883 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 LINC01590Q5TEZ4 76 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 CTHRC1Q96CG8 243 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 SMIM2Q9BVW6 85 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 CHCHD2Q9Y6H1 151 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-210ENST00000409694 E9PQ18 207 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 PIN1P1O15428 100 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 CTSBP07858 339 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 CLPSL1A2RUU4 121 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 IGHV3OR16-8A0A075B7F1 116 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 CGB3P0DN86 165 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 DAZ1Q9NQZ3 744 aaKnown RBP6.49□□□□□ -1.37
SYNE1-210ENST00000409694 GTF3C1Q12789 2109 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 RNF222A6NCQ9 220 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 PMS2P5A8MQ11 134 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 HERVK_113P63121 156 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 SCRT2Q9NQ03 307 aa6.49□□□□□ -1.37
SYNE1-210ENST00000409694 KLF5Q13887 457 aaPredicted RBP6.48□□□□□ -1.37
SYNE1-210ENST00000409694 VMO1Q7Z5L0 202 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 IGHV2-26A0A0B4J1V2 119 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 TEX48A0A1B0GUV7 120 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 CFHR2P36980 270 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 hDV102S1A0JD36 115 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 WISP3O95389 354 aaPredicted RBP6.48□□□□□ -1.37
SYNE1-210ENST00000409694 TFF2Q03403 129 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 TAL2Q16559 108 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 TRAV40A0A0B4J280 105 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 FAM231BA6NCW3 169 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 TREML4Q6UXN2 200 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 WNK2Q9Y3S1 2297 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 PATE3B3GLJ2 98 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 FGF16O43320 207 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 NDUFB1O75438 58 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 PPIFP30405 207 aaKnown RBP6.48□□□□□ -1.37
SYNE1-210ENST00000409694 ORMDL1Q9P0S3 153 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 ZGRF1Q86YA3 2104 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 F6UB75 175 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 TIMM23O14925 209 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 RPL35AP18077 110 aaKnown RBP6.48□□□□□ -1.37
SYNE1-210ENST00000409694 IGHV1-2P23083 117 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 RPL15P61313 204 aaKnown RBP6.48□□□□□ -1.37
SYNE1-210ENST00000409694 MPV17L2Q567V2 206 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 DEFB121Q5J5C9 76 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 C1orf43Q9BWL3 253 aa6.48□□□□□ -1.37
SYNE1-210ENST00000409694 DAD1P61803 113 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 SLAQ13239 276 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 GAS1P54826 345 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 PSG7Q13046 419 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 C14orf178Q8N769 122 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-210ENST00000409694 NDUFB8O95169 186 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 SCN10AQ9Y5Y9 1956 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 CGB7P0DN87 165 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 ZC2HC1BQ5TFG8 222 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 LINC01551Q86U37 167 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 DEPPQ9NTK1 212 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 PLXNA2O75051 1894 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 WFDC9Q8NEX5 89 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 ZNF319Q9P2F9 582 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 SIPA1L1O43166 1804 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 J3KT08 172 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 K7EP34 96 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 ITGBL1O95965 494 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-210ENST00000409694 Q5BKY6 102 aa6.47□□□□□ -1.37
SYNE1-210ENST00000409694 EXOC3-AS1Q8N2X6 119 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms