RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 TEX22C9J3V5 150 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 M0R2Z0 102 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 HLA-DMBP28068 263 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 YPEL3P61236 119 aaPredicted RBP10.62□□□□□ -0.71
VPS54-203ENST00000409558 ERASQ7Z444 233 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 Q8TAT8 98 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 TEX45Q8NA69 505 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 LOC389332A0A1B0GUA5 103 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 CHEK1O14757 476 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 ZFP36P26651 326 aaKnown RBP10.62□□□□□ -0.71
VPS54-203ENST00000409558 FAM120AOSQ5T036 256 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 VMO1Q7Z5L0 202 aa10.62□□□□□ -0.71
VPS54-203ENST00000409558 A0A1W2PS18 150 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 TNFRSF13BO14836 293 aaPredicted RBP10.61□□□□□ -0.71
VPS54-203ENST00000409558 IGLC1P0CG04 106 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 NDPQ00604 133 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 TMEM249Q2WGJ8 235 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 DMRTA1Q5VZB9 504 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 NBR2O15453 112 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 IGKV1-17P01599 117 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 TXN2Q99757 166 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 ZMAT5Q9UDW3 170 aaKnown RBP10.61□□□□□ -0.71
VPS54-203ENST00000409558 COA6Q5JTJ3 125 aaKnown RBP10.61□□□□□ -0.71
VPS54-203ENST00000409558 TPTE2P1Q5T6R2 138 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 KAAG1Q9UBP8 84 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 ZANQ9Y493 2812 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 WNK1Q9H4A3 2382 aa10.61□□□□□ -0.71
VPS54-203ENST00000409558 TCRAP04437 139 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 KLRB1Q12918 225 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 GPR82Q96P67 336 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 SNHG12Q9BXW3 62 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 HIST1H1EP10412 219 aaKnown RBP10.6□□□□□ -0.71
VPS54-203ENST00000409558 PPIFP30405 207 aaKnown RBP10.6□□□□□ -0.71
VPS54-203ENST00000409558 IGKV2-40A0A087WW87 121 aaPredicted RBP10.6□□□□□ -0.71
VPS54-203ENST00000409558 IZUMO1RA6ND01 250 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 IGKV2D-40P01614 121 aaPredicted RBP10.6□□□□□ -0.71
VPS54-203ENST00000409558 PDLIM4P50479 330 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 C19orf24Q9BVV8 132 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 ZNF462Q96JM2 2506 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 NOTCH2Q04721 2471 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 BRD3OSQ6XYD6 125 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 OR4F17Q8NGA8 305 aa10.6□□□□□ -0.71
VPS54-203ENST00000409558 GPR183P32249 361 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 LINC00311Q8N616 119 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 C8orf46Q8TAG6 207 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 RNF2Q99496 336 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 NDUFAF3Q9BU61 184 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 GNB1LQ9BYB4 327 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 G3V318 75 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 GPX1P07203 203 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 TMEM30BQ3MIR4 351 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 WDR73Q6P4I2 378 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 C8orf49Q96NF6 230 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 LINC00173Q6ZV60 143 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 Q6ZVH6 145 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 WFDC3Q8IUB2 231 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 OR4A5Q8NH83 315 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 RNF125Q96EQ8 232 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 BPESC1Q9GZL8 116 aa10.59□□□□□ -0.71
VPS54-203ENST00000409558 HLA-DQA1P01909 254 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 C3orf79P0CE67 100 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 SPATA45Q537H7 98 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 TMEM75Q8N9X5 138 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 TSKUQ8WUA8 353 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 SOX21Q9Y651 276 aaPredicted RBP10.58□□□□□ -0.72
VPS54-203ENST00000409558 ARL2-SNX15V9GYD0 113 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 LINC01548A6NM66 108 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 LY6EQ16553 131 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 C5orf17Q8NAS9 161 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 C18orf32Q8TCD1 76 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 GTSF1Q8WW33 167 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 MSRB2Q9Y3D2 182 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 K7EIM0 57 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 SNAI2O43623 268 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 NDUFB8O95169 186 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 NAV2Q8IVL1 2488 aa10.58□□□□□ -0.72
VPS54-203ENST00000409558 TAS2R60P59551 318 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 FNDC10F2Z333 226 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 ZNF324O75467 553 aaPredicted RBP10.57□□□□□ -0.72
VPS54-203ENST00000409558 GP9P14770 177 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 BPIFA4PQ86YQ2 179 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 TMEM116Q8NCL8 245 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 TRGV9Q99603 122 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 RPP21Q9H633 154 aaKnown RBP10.57□□□□□ -0.72
VPS54-203ENST00000409558 GNLYP22749 145 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 SSX8Q7RTT4 187 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 THAP8Q8NA92 274 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 GRAMD2BQ96HH9 432 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 SMIM27A0A1W2PRY6 76 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 UNQ5815/PRO19632Q6UWF5 114 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 ARPC1AQ92747 370 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 KCNS1Q96KK3 526 aa10.57□□□□□ -0.72
VPS54-203ENST00000409558 I3L2K1 104 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 HLA-DRB1P01911 266 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 NHLH1Q02575 133 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 TMEM183BQ1AE95 376 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 Q6ZN92 141 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 LCNL1Q6ZST4 164 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 TCAPO15273 167 aa10.56□□□□□ -0.72
VPS54-203ENST00000409558 CEACAM3P40198 252 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms