RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 APOHP02749 345 aaPredicted RBP16.68■□□□□ 0.26
CTCF-202ENST00000401394 FBXL15Q9H469 300 aa16.68■□□□□ 0.26
CTCF-202ENST00000401394 RAB9BQ9NP90 201 aa16.68■□□□□ 0.26
CTCF-202ENST00000401394 TEX36Q5VZQ5 186 aa16.67■□□□□ 0.26
CTCF-202ENST00000401394 TLN1Q9Y490 2541 aaKnown RBP16.67■□□□□ 0.26
CTCF-202ENST00000401394 Q86TA4 180 aa16.67■□□□□ 0.26
CTCF-202ENST00000401394 C5orf17Q8NAS9 161 aa16.67■□□□□ 0.26
CTCF-202ENST00000401394 NEU4Q8WWR8 484 aaPredicted RBP16.67■□□□□ 0.26
CTCF-202ENST00000401394 SCRT2Q9NQ03 307 aa16.67■□□□□ 0.26
CTCF-202ENST00000401394 SUB1P53999 127 aaKnown RBP eCLIP16.66■□□□□ 0.26
CTCF-202ENST00000401394 PPIAL4DF5H284 164 aa16.66■□□□□ 0.26
CTCF-202ENST00000401394 CRXO43186 299 aaPredicted RBP16.66■□□□□ 0.26
CTCF-202ENST00000401394 PSG9Q00887 426 aa16.66■□□□□ 0.26
CTCF-202ENST00000401394 BSPH1Q075Z2 132 aa16.66■□□□□ 0.26
CTCF-202ENST00000401394 IGFL2Q6UWQ7 119 aa16.66■□□□□ 0.26
CTCF-202ENST00000401394 ATP5L2Q7Z4Y8 100 aa16.66■□□□□ 0.26
CTCF-202ENST00000401394 AKAP6Q13023 2319 aa16.66■□□□□ 0.26
CTCF-202ENST00000401394 CUL9Q8IWT3 2517 aa16.66■□□□□ 0.26
CTCF-202ENST00000401394 CRIP1P50238 77 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 LRRC10Q5BKY1 277 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 OR8A1Q8NGG7 326 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 C8orf49Q96NF6 230 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 NCOR1P1Q9H4R4 102 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 IGHV3OR16-8A0A075B7F1 116 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 C17orf100A8MU93 164 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 COX7A1P24310 79 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 LOXP28300 417 aaPredicted RBP16.65■□□□□ 0.26
CTCF-202ENST00000401394 PRSS57Q6UWY2 283 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 CELSR1Q9NYQ6 3014 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 PPIAL4EA0A075B759 164 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 PPIAL4FP0DN26 164 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 IFI27P40305 119 aaPredicted RBP16.65■□□□□ 0.26
CTCF-202ENST00000401394 ARF6P62330 175 aa16.65■□□□□ 0.26
CTCF-202ENST00000401394 ZNF292O60281 2723 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 SERTM2A0A1B0GWG4 89 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 TMEM213A2RRL7 107 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 IGFL4Q6B9Z1 124 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 PIP4P2Q8N4L2 257 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 MAP1LC3CQ9BXW4 147 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 HILPDAQ9Y5L2 63 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.64■□□□□ 0.25
CTCF-202ENST00000401394 K7EP13 123 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 RPL27AP46776 148 aaKnown RBP16.64■□□□□ 0.25
CTCF-202ENST00000401394 FAM169BQ8N8A8 192 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 SLC25A39Q9BZJ4 359 aaPredicted RBP16.64■□□□□ 0.25
CTCF-202ENST00000401394 ST20Q9HBF5 79 aa16.64■□□□□ 0.25
CTCF-202ENST00000401394 SMKR1H3BMG3 65 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 VMA21Q3ZAQ7 101 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 TMEM133Q9H2Q1 129 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 CRYGCP07315 174 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 FTH1P19P0C7X4 201 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 ANKRD39Q53RE8 183 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 FMC1Q96HJ9 113 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 CST9LQ9H4G1 147 aa16.63■□□□□ 0.25
CTCF-202ENST00000401394 TMEM178BH3BS89 294 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 C2orf91Q6ZV80 131 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 VSTM2AQ8TAG5 236 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 TMEM191AQ9H0A3 160 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 NDUFB3O43676 98 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 SAP30O75446 220 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 C8orf46Q8TAG6 207 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 SPTBN1Q01082 2364 aaKnown RBP16.62■□□□□ 0.25
CTCF-202ENST00000401394 HSBP1L1C9JCN9 74 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 DEFB125Q8N687 156 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 VPS25Q9BRG1 176 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 CHRDL1Q9BU40 450 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 HIGD1AQ9Y241 93 aa16.62■□□□□ 0.25
CTCF-202ENST00000401394 ATP5IP56385 69 aaPredicted RBP16.61■□□□□ 0.25
CTCF-202ENST00000401394 TM4SF20Q53R12 229 aa16.61■□□□□ 0.25
CTCF-202ENST00000401394 COL12A1Q99715 3063 aa16.61■□□□□ 0.25
CTCF-202ENST00000401394 IGLC1P0CG04 106 aa16.61■□□□□ 0.25
CTCF-202ENST00000401394 CDKN1BP46527 198 aa16.61■□□□□ 0.25
CTCF-202ENST00000401394 CHCHD1Q96BP2 118 aaKnown RBP16.61■□□□□ 0.25
CTCF-202ENST00000401394 IGHV1-8P0DP01 117 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 C1orf185Q5T7R7 199 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 TMEM186Q96B77 213 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 TRAV30A0A087WSZ9 112 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 A0A096LNJ9 63 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 IGHV3-23P01764 117 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 OR5AL1P0C617 328 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 PRSS3P2Q8NHM4 247 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 TRGV9Q99603 122 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 SIGLEC9Q9Y336 463 aa16.6■□□□□ 0.25
CTCF-202ENST00000401394 GAS8-AS1O95177 125 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 LIPFP07098 398 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 AMN1Q8IY45 258 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 TEX22C9J3V5 150 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 IGKV1-17P01599 117 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 THBDP07204 575 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 NDFIP1Q9BT67 221 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 ZNF747Q9BV97 191 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 AP5S1Q9NUS5 200 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 IGHV3-35A0A0C4DH35 117 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 GPR183P32249 361 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 DLX6P56179 175 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 TTTY13Q9BZ97 58 aa16.59■□□□□ 0.25
CTCF-202ENST00000401394 MAP1AP78559 2803 aaPredicted RBP16.58■□□□□ 0.25
CTCF-202ENST00000401394 K7EMI3 77 aa16.58■□□□□ 0.24
CTCF-202ENST00000401394 OCIAD2Q56VL3 154 aa16.58■□□□□ 0.24
CTCF-202ENST00000401394 RAB37Q96AX2 223 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms