RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 C22orf46C9J442 243 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 DIAPH2-AS1Q14236 149 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 OR9G4Q8NGQ1 327 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 BLNKQ8WV28 456 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 LINC00574Q9H8X3 128 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 TSSC4Q9Y5U2 329 aaPredicted RBP12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 DYSFO75923 2080 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 SIVA1O15304 175 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 CCL8P80075 99 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 TCTEX1D4Q5JR98 221 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 FLYWCH2Q96CP2 140 aaKnown RBP12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 CEP250Q9BV73 2442 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 PLXNB1O43157 2135 aa12.81□□□□□ -0.36
CHMP1A-201ENST00000397901 ZFHX2Q9C0A1 2572 aaPredicted RBP12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 A1L4Q6 167 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 J3QR89 54 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 ZNF207O43670 478 aaKnown RBP12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 BOD1L2Q8IYS8 172 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 RBMXL3Q8N7X1 1067 aaKnown RBP12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 OR4X2Q8NGF9 303 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 OR1L4Q8NGR5 311 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 FXYD5Q96DB9 178 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 RIF1Q5UIP0 2472 aaKnown RBP12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 IGKV1D-37A0A075B6S9 117 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 TRAV26-1A0A087WT03 109 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 CGB1A6NKQ9 187 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 CD24P25063 80 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 Q6ZS92 163 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 LINC00305Q7Z4B0 112 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 ZCCHC24Q8N2G6 241 aaKnown RBP12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 LINC00312Q9Y6C7 94 aa12.8□□□□□ -0.36
CHMP1A-201ENST00000397901 TCRBV4S1A1TA0A5B7 111 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 MOSP00540 346 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 ORM2P19652 201 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 CRYBA4P53673 196 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 SPATA25Q9BR10 227 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 C7orf69Q9H7B7 122 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 MGAQ8IWI9 3026 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 SLC25A5P05141 298 aaKnown RBP12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 MC5RP33032 325 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 SAMD5Q5TGI4 173 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 CCDC144NLQ6NUI1 221 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 TMUB1Q9BVT8 246 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 FAM215AQ9Y5M1 114 aa12.79□□□□□ -0.36
CHMP1A-201ENST00000397901 SMAD7O15105 426 aaKnown RBP12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 NBL1P41271 181 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 FAM27E3Q08E93 113 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 RUSC1-AS1Q66K80 236 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 FOXI2Q6ZQN5 318 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 OR5AN1Q8NGI8 311 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 ZNF747Q9BV97 191 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 COL25A1Q9BXS0 654 aaPredicted RBP12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 A8MWL6 223 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 H3BTX0 84 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 FSTL3O95633 263 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 TMEM177Q53S58 311 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 ADAMTSL5Q6ZMM2 481 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 PDPNQ86YL7 162 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 OR10X1Q8NGY0 326 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 TPSG1Q9NRR2 321 aa12.78□□□□□ -0.36
CHMP1A-201ENST00000397901 BSNQ9UPA5 3926 aa12.77□□□□□ -0.36
CHMP1A-201ENST00000397901 DCHS1Q96JQ0 3298 aa12.77□□□□□ -0.36
CHMP1A-201ENST00000397901 ZNF138P52744 262 aa12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 TMEM30BQ3MIR4 351 aa12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 RPP21Q9H633 154 aaKnown RBP12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 PGPA6NDG6 321 aa12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 K7EM74 188 aa12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 APELAP0DMC3 54 aa12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 TMEM167AQ8TBQ9 72 aa12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 EPDR1Q9UM22 224 aa12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 TIMM8BQ9Y5J9 83 aaPredicted RBP12.77□□□□□ -0.37
CHMP1A-201ENST00000397901 IGHV3-21A0A0B4J1V1 117 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 CHEK1O14757 476 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 SLC25A17O43808 307 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 FCN3O75636 299 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 CT83Q5H943 113 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 TEX36Q5VZQ5 186 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 HCP5Q6MZN7 132 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 CFAP161Q6P656 301 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 STXBP6Q8NFX7 210 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 OR4C13Q8NGP0 309 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 NEU4Q8WWR8 484 aaPredicted RBP12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 SSUH2Q9Y2M2 353 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 NCR2O95944 276 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 SMIM13P0DJ93 91 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 CD40P25942 277 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 SUB1P53999 127 aaKnown RBP eCLIP12.76□□□□□ -0.373e-8■■□□□ 12.4
CHMP1A-201ENST00000397901 TMEM200BQ69YZ2 307 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 LINC00322Q6ZN03 302 aaPredicted RBP12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 MRAP2Q96G30 205 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 RITA1Q96K30 269 aa12.76□□□□□ -0.37
CHMP1A-201ENST00000397901 A0A1W2PPI3 338 aa12.75□□□□□ -0.37
CHMP1A-201ENST00000397901 CSN1S1P47710 185 aa12.75□□□□□ -0.37
CHMP1A-201ENST00000397901 ABHD17AQ96GS6 310 aa12.75□□□□□ -0.37
CHMP1A-201ENST00000397901 PGLYRP4Q96LB8 373 aa12.75□□□□□ -0.37
CHMP1A-201ENST00000397901 MYCNOSP40205 109 aa12.74□□□□□ -0.37
CHMP1A-201ENST00000397901 MTURNQ8N3F0 131 aa12.74□□□□□ -0.37
CHMP1A-201ENST00000397901 THAP8Q8NA92 274 aa12.74□□□□□ -0.37
CHMP1A-201ENST00000397901 VGLL1Q99990 258 aa12.74□□□□□ -0.37
CHMP1A-201ENST00000397901 AP5S1Q9NUS5 200 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms