RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 C4BPBP20851 252 aa17.27■□□□□ 0.36
SHMT1-204ENST00000395682 DEFB1P60022 68 aa17.27■□□□□ 0.36
SHMT1-204ENST00000395682 CYCSP99999 105 aaKnown RBP17.27■□□□□ 0.36
SHMT1-204ENST00000395682 RAB31Q13636 194 aa17.27■□□□□ 0.36
SHMT1-204ENST00000395682 PXDC1Q5TGL8 231 aa17.27■□□□□ 0.36
SHMT1-204ENST00000395682 S100A7AQ86SG5 101 aa17.27■□□□□ 0.36
SHMT1-204ENST00000395682 HLA-DRB4P13762 266 aa17.26■□□□□ 0.35
SHMT1-204ENST00000395682 CAMLGP49069 296 aa17.26■□□□□ 0.35
SHMT1-204ENST00000395682 HBG1P69891 147 aa17.26■□□□□ 0.35
SHMT1-204ENST00000395682 HBG2P69892 147 aa17.26■□□□□ 0.35
SHMT1-204ENST00000395682 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa17.26■□□□□ 0.35
SHMT1-204ENST00000395682 ARV1Q9H2C2 271 aa17.26■□□□□ 0.35
SHMT1-204ENST00000395682 HLA-DRB4X5D2U9 266 aa17.26■□□□□ 0.35
SHMT1-204ENST00000395682 RPL7P18124 248 aaKnown RBP17.25■□□□□ 0.35
SHMT1-204ENST00000395682 VWC2Q2TAL6 325 aa17.25■□□□□ 0.35
SHMT1-204ENST00000395682 LRRC37A5PQ49AS3 106 aa17.25■□□□□ 0.35
SHMT1-204ENST00000395682 GDF5OSQ5U4N7 250 aa17.25■□□□□ 0.35
SHMT1-204ENST00000395682 FOXI2Q6ZQN5 318 aa17.25■□□□□ 0.35
SHMT1-204ENST00000395682 SAV1Q9H4B6 383 aaPredicted RBP17.25■□□□□ 0.35
SHMT1-204ENST00000395682 CLEC5AQ9NY25 188 aa17.25■□□□□ 0.35
SHMT1-204ENST00000395682 WDR83OSQ9Y284 106 aa17.25■□□□□ 0.35
SHMT1-204ENST00000395682 ATF4P18848 351 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-204ENST00000395682 H2BFSP57053 126 aa17.24■□□□□ 0.35
SHMT1-204ENST00000395682 NUTF2P61970 127 aaKnown RBP17.24■□□□□ 0.35
SHMT1-204ENST00000395682 FGL1Q08830 312 aa17.24■□□□□ 0.35
SHMT1-204ENST00000395682 C20orf173Q96LM9 149 aa17.24■□□□□ 0.35
SHMT1-204ENST00000395682 E5RGE8 158 aa17.23■□□□□ 0.35
SHMT1-204ENST00000395682 IGKV3-20P01619 116 aa17.23■□□□□ 0.35
SHMT1-204ENST00000395682 ATP6V1FQ16864 119 aa17.23■□□□□ 0.35
SHMT1-204ENST00000395682 LINC00305Q7Z4B0 112 aa17.23■□□□□ 0.35
SHMT1-204ENST00000395682 RPRMQ9NS64 109 aa17.23■□□□□ 0.35
SHMT1-204ENST00000395682 OR5AC2Q9NZP5 309 aa17.23■□□□□ 0.35
SHMT1-204ENST00000395682 STARD9Q9P2P6 4700 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 UBE2L5PA0A1B0GUS4 154 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 H0YIZ8 118 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 COX7A2P2O60397 106 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 NHLH2Q02577 135 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 MIC13Q5XKP0 118 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 EBLN2Q6P2I7 272 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 CSNK1G2-AS1Q8NCQ2 148 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 TMEM37Q8WXS4 190 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 SLC25A31Q9H0C2 315 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 XCL2Q9UBD3 114 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 RNF24Q9Y225 148 aa17.22■□□□□ 0.35
SHMT1-204ENST00000395682 ELOA3CA0A087WX78 387 aaPredicted RBP17.21■□□□□ 0.35
SHMT1-204ENST00000395682 CXorf65A6NEN9 183 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 F6UB75 175 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 BAXQ07812 192 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 PMS2P11Q13670 270 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 C10orf113Q5VZT2 155 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 SPATA31B1PQ5VZV4 182 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 IGFL4Q6B9Z1 124 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 Q6ZRG5 221 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 OR4B1Q8NGF8 309 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 C1QTNF4Q9BXJ3 329 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 DNAJC4Q9NNZ3 241 aa17.21■□□□□ 0.35
SHMT1-204ENST00000395682 TRAV8-2A0A0B4J237 113 aa17.2■□□□□ 0.34
SHMT1-204ENST00000395682 DEFB4AO15263 64 aa17.2■□□□□ 0.34
SHMT1-204ENST00000395682 PPP1R1CQ8WVI7 109 aa17.2■□□□□ 0.34
SHMT1-204ENST00000395682 A0A0J9YX75 114 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 FGF7P21781 194 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 PRR20EP86478 221 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 PRR20CP86479 221 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 PRR20DP86480 221 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 PRR20BP86481 221 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 PRR20AP86496 221 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 FAM78BQ5VT40 261 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 CLUHP3Q96NS8 147 aa17.19■□□□□ 0.34
SHMT1-204ENST00000395682 C11orf68Q9H3H3 251 aaKnown RBP17.19■□□□□ 0.34
SHMT1-204ENST00000395682 DYNC2H1Q8NCM8 4307 aaKnown RBP17.18■□□□□ 0.34
SHMT1-204ENST00000395682 ZNF705EA8MWA4 302 aaPredicted RBP17.18■□□□□ 0.34
SHMT1-204ENST00000395682 PTTG1O95997 202 aa17.18■□□□□ 0.34
SHMT1-204ENST00000395682 RPL29P47914 159 aaKnown RBP17.18■□□□□ 0.34
SHMT1-204ENST00000395682 FXYD7P58549 80 aa17.18■□□□□ 0.34
SHMT1-204ENST00000395682 RNF182Q8N6D2 247 aa17.18■□□□□ 0.34
SHMT1-204ENST00000395682 OR5C1Q8NGR4 320 aa17.18■□□□□ 0.34
SHMT1-204ENST00000395682 LRRC20Q8TCA0 184 aa17.18■□□□□ 0.34
SHMT1-204ENST00000395682 CHAC2Q8WUX2 184 aa17.18■□□□□ 0.34
SHMT1-204ENST00000395682 RNF126Q9BV68 326 aa17.18■□□□□ 0.34
SHMT1-204ENST00000395682 A0A087X0K7 114 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 MRPS12O15235 138 aaKnown RBP17.17■□□□□ 0.34
SHMT1-204ENST00000395682 OPCMLQ14982 345 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 MORN5Q5VZ52 161 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 Q8NAQ8 132 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 OR1L4Q8NGR5 311 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 SLC39A9Q9NUM3 307 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 ALG5Q9Y673 324 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 X6R8D5 127 aa17.17■□□□□ 0.34
SHMT1-204ENST00000395682 LCE6AA0A183 80 aa17.16■□□□□ 0.34
SHMT1-204ENST00000395682 MPC2O95563 127 aa17.16■□□□□ 0.34
SHMT1-204ENST00000395682 MIFP14174 115 aa17.16■□□□□ 0.34
SHMT1-204ENST00000395682 B2MP61769 119 aa17.16■□□□□ 0.34
SHMT1-204ENST00000395682 PSG9Q00887 426 aa17.16■□□□□ 0.34
SHMT1-204ENST00000395682 BPIFA4PQ86YQ2 179 aa17.16■□□□□ 0.34
SHMT1-204ENST00000395682 C11orf45Q8TAV5 145 aa17.16■□□□□ 0.34
SHMT1-204ENST00000395682 IGHV4-28A0A0C4DH34 117 aa17.15■□□□□ 0.34
SHMT1-204ENST00000395682 MPDU1O75352 247 aa17.15■□□□□ 0.34
SHMT1-204ENST00000395682 RBMY1A1P0DJD3 496 aaKnown RBP17.15■□□□□ 0.34
SHMT1-204ENST00000395682 RBMY1CP0DJD4 496 aa17.15■□□□□ 0.34
SHMT1-204ENST00000395682 CLINT1Q14677 625 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms