RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 VN1R17PQ8TDU5 208 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 HSPB9Q9BQS6 159 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 PXMP4Q9Y6I8 212 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 C20orf202A1L168 122 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 PDE6DO43924 150 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 HYPMO75409 117 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 AAMDCQ9H7C9 122 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 SAP30O75446 220 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 CD33P20138 364 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 PARD6GQ9BYG4 376 aaPredicted RBP8.24□□□□□ -1.09
COL6A3-205ENST00000392004 ZNF586Q9NXT0 402 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 EXPH5Q8NEV8 1989 aa8.24□□□□□ -1.09
COL6A3-205ENST00000392004 TMSB15BA0A087X1C1 80 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 GRIFINA4D1Z8 144 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 ZNF585BQ52M93 769 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 GLMPQ8WWB7 406 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 METTL26Q96S19 204 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 CHTOPQ9Y3Y2 248 aaKnown RBP8.23□□□□□ -1.09
COL6A3-205ENST00000392004 C15orf61A6NNL5 157 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 FAM90A26D6RGX4 464 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 NPPCP23582 126 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 S100A7P31151 101 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 PTTG1IPP53801 180 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 SYNJ2BPP57105 145 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 KRTDAPP60985 99 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 HAPLN4Q86UW8 402 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 C11orf42Q8N5U0 333 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 TCTEX1D1Q8N7M0 179 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 C16orf92Q96LL3 132 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 TXN2Q99757 166 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 TBL2Q9Y4P3 447 aaKnown RBP8.23□□□□□ -1.09
COL6A3-205ENST00000392004 NDUFB4O95168 129 aa8.23□□□□□ -1.09
COL6A3-205ENST00000392004 A0A0G2JLM5 398 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 A0A1B0GUS0 222 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 SPINK4O60575 86 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 SUMO1P63165 101 aaKnown RBP8.22□□□□□ -1.09
COL6A3-205ENST00000392004 SAPCD1Q5SSQ6 148 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 OR10G8Q8NGN5 311 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 C20orf144Q9BQM9 153 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 ZNF841Q6ZN19 808 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 DYNAPQ8N1N2 210 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 ADMP35318 185 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 KLHDC1Q8N7A1 406 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 HIGD1AQ9Y241 93 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 RNF114Q9Y508 228 aa8.22□□□□□ -1.09
COL6A3-205ENST00000392004 A0A1W2PPI3 338 aa8.21□□□□□ -1.09
COL6A3-205ENST00000392004 TCF23Q7RTU1 214 aa8.21□□□□□ -1.09
COL6A3-205ENST00000392004 TEX45Q8NA69 505 aa8.21□□□□□ -1.09
COL6A3-205ENST00000392004 S100A4P26447 101 aaKnown RBP8.21□□□□□ -1.1
COL6A3-205ENST00000392004 EMP1P54849 157 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 LOXL1Q08397 574 aaPredicted RBP8.21□□□□□ -1.1
COL6A3-205ENST00000392004 FOXL1Q12952 345 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 TM4SF20Q53R12 229 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 GCSAMLQ5JQS6 135 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 LINC01551Q86U37 167 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 SFRP2Q96HF1 295 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 OVOL3O00110 214 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 CT45A10P0DMU9 189 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 RPL15P61313 204 aaKnown RBP8.21□□□□□ -1.1
COL6A3-205ENST00000392004 C1orf159Q96HA4 380 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 DNAJC4Q9NNZ3 241 aa8.21□□□□□ -1.1
COL6A3-205ENST00000392004 J3QLI3 93 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 K7EQM0 130 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 BMPR1BO00238 502 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 IGKV1-39P01597 117 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 IGKV1D-39P04432 117 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 HNRNPA3P51991 378 aaKnown RBP8.2□□□□□ -1.1
COL6A3-205ENST00000392004 TMEM14EPQ6UXP3 125 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 MRPL18Q9H0U6 180 aaKnown RBP8.2□□□□□ -1.1
COL6A3-205ENST00000392004 TRBV6-6A0A0A6YYG2 114 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 LINC01548A6NM66 108 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 SERF1AO75920 110 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 CBLN1P23435 193 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 BMI1P35226 326 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 IGFL4Q6B9Z1 124 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 ZNF738Q8NE65 137 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 OR1L6Q8NGR2 347 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 NPCDR1Q9BY65 106 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 VPREB3Q9UKI3 123 aa8.2□□□□□ -1.1
COL6A3-205ENST00000392004 DIRC3C9JPN6 131 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 CORTO00230 105 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 NUPR1O60356 82 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 RELBQ01201 579 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 ATP5G3P48201 142 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 Q6ZN92 141 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 STPG3Q8N7X2 389 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 Q8NFD4 153 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 OR4C5Q8NGB2 326 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 OR5AN1Q8NGI8 311 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 NDUFB8O95169 186 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 IL6RP08887 468 aaPredicted RBP8.19□□□□□ -1.1
COL6A3-205ENST00000392004 IER3P46695 156 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 TEX43Q6ZNM6 134 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 Q6ZWC4 215 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 LINC00305Q7Z4B0 112 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 CELSR2Q9HCU4 2923 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 ZFP30Q9Y2G7 519 aa8.19□□□□□ -1.1
COL6A3-205ENST00000392004 PGPEP1LA6NFU8 196 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 OOSP1A8MZH6 123 aa8.18□□□□□ -1.1
COL6A3-205ENST00000392004 AMTP48728 403 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms