RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 UTRNP46939 3433 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 CFHR2P36980 270 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 MEGF9Q9H1U4 602 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 A0A1B0GW15 77 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 VDAC2P45880 294 aaPredicted RBP5.3□□□□□ -1.56
SMC1A-202ENST00000375340 MMP23AO75900 390 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 IGKCP01834 107 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 NDPQ00604 133 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 C18orf32Q8TCD1 76 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 TRGV9Q99603 122 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 IGHV3-64A0A075B6Q5 118 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 DKK1O94907 266 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 TMEM170BQ5T4T1 132 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 PVRIGQ6DKI7 326 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 ORAOV1Q8WV07 137 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 ST20Q9HBF5 79 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 LY96Q9Y6Y9 160 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 CACNA1BQ00975 2339 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 PSG3Q16557 428 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 RNF182Q8N6D2 247 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 TMEM213A2RRL7 107 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 ERVK11-1P61568 191 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 TMEM219Q86XT9 240 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 SMIM12Q96EX1 92 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 DUX5Q96PT3 197 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 A0A1W2PPI3 338 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 TOMM40O96008 361 aa5.3□□□□□ -1.56
SMC1A-202ENST00000375340 COL8A2P25067 703 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 CRIP3Q6Q6R5 217 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 ZGRF1Q86YA3 2104 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 IGHV1-24A0A0C4DH33 117 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 BUB1B-PAK6H3BSN5 160 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 Q0VG73 95 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 IGHV4-39P01824 125 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 RHOGP84095 191 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 SAMD5Q5TGI4 173 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 AMN1Q8IY45 258 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 STPG4Q8N801 248 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 CHTOPQ9Y3Y2 248 aaKnown RBP5.29□□□□□ -1.56
SMC1A-202ENST00000375340 SAMD13Q5VXD3 122 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 DGAT2L7PQ6IED9 249 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 RASL11AQ6T310 242 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 Q6ZPA2 131 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 NUP37Q8NFH4 326 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 FAM168AQ92567 244 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 ARMS2P0C7Q2 107 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 TDRG1Q3Y452 100 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 PRR30Q53SZ7 412 aaPredicted RBP5.29□□□□□ -1.56
SMC1A-202ENST00000375340 ZNF833PQ6ZTB9 187 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 COX11Q9Y6N1 276 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 FREM1Q5H8C1 2179 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 APOMO95445 188 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 Q5PR19 223 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 Q6AWC8 147 aa5.29□□□□□ -1.56
SMC1A-202ENST00000375340 DPM2O94777 84 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 IGKV3OR2-268A0A0C4DH90 116 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 SRRM4A7MD48 611 aaKnown RBP5.28□□□□□ -1.56
SMC1A-202ENST00000375340 TDGF1P13385 188 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 NDUFA4L2Q9NRX3 87 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 A0A1B0GWB2 263 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 C11orf53Q8IXP5 236 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 JMJD8Q96S16 334 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 GTF3C1Q12789 2109 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 OR11H12B2RN74 326 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 OR11H1Q8NG94 326 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 OR11H2Q8NH07 326 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 ZNF256Q9Y2P7 627 aaPredicted RBP5.28□□□□□ -1.56
SMC1A-202ENST00000375340 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.28□□□□□ -1.56
SMC1A-202ENST00000375340 TPTE2P1Q5T6R2 138 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 TMEM167AQ8TBQ9 72 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 IFI27L1Q96BM0 104 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 RITA1Q96K30 269 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 MRPL27Q9P0M9 148 aaKnown RBP5.28□□□□□ -1.56
SMC1A-202ENST00000375340 A0A0G2JLM5 398 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.28□□□□□ -1.56
SMC1A-202ENST00000375340 FAM159AQ6UWV7 190 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 RNASE6Q93091 150 aaKnown RBP5.28□□□□□ -1.56
SMC1A-202ENST00000375340 LMO1P25800 156 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 UBE2V1Q13404 147 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 KIR3DS1Q14943 382 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 SIGLEC9Q9Y336 463 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 COL5A1P20908 1838 aaPredicted RBP5.28□□□□□ -1.56
SMC1A-202ENST00000375340 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.28□□□□□ -1.561e-7■■■■■ 47.3
SMC1A-202ENST00000375340 THBDP07204 575 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 NPC2P61916 151 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 SIGLEC15Q6ZMC9 328 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 OR4X2Q8NGF9 303 aa5.28□□□□□ -1.56
SMC1A-202ENST00000375340 TRAV26-2A0A0B4J265 109 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 IGKV3D-20A0A0C4DH25 116 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 UBE2L6O14933 153 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 LAGE3Q14657 143 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 TEX43Q6ZNM6 134 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 ODF3L1Q8IXM7 274 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 C20orf144Q9BQM9 153 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 C11orf1Q9H5F2 150 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 BPTFQ12830 3046 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 C15orf32Q32M92 178 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 CLEC2AQ6UVW9 174 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 ATP5LO75964 103 aa5.27□□□□□ -1.57
SMC1A-202ENST00000375340 IL17RELQ6ZVW7 336 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms