RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FXYD7P58549 80 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 STXBP6Q8NFX7 210 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 RASL11BQ9BPW5 248 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 ONECUT1Q9UBC0 465 aa9.68□□□□□ -0.86
CLIP3-201ENST00000360535 LOC389332A0A1B0GUA5 103 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 VSTM5A8MXK1 200 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 SIGLEC9Q9Y336 463 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 BSNQ9UPA5 3926 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV2-26A0A0B4J1V2 119 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV1-24A0A0C4DH33 117 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV1-69-2A0A0G2JMI3 117 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 M0R3E3 92 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 HES1Q14469 280 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 TMEM30BQ3MIR4 351 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 PPP1R27Q86WC6 154 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 OR8B3Q8NGG8 313 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 C7orf69Q9H7B7 122 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV3-35A0A0C4DH35 117 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 E7EQL1 145 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV3-23P01764 117 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 LGALS7P47929 136 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 MRGPRG-AS1Q2M3A8 158 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 OR4A5Q8NH83 315 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 LINC01560Q8TB33 94 aa9.67□□□□□ -0.86
CLIP3-201ENST00000360535 WIPF2Q8TF74 440 aaPredicted RBP9.67□□□□□ -0.86
CLIP3-201ENST00000360535 GP9P14770 177 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 VAMP3Q15836 100 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 TMEM155Q4W5P6 130 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 MPV17L2Q567V2 206 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 C8orf46Q8TAG6 207 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 TMUB1Q9BVT8 246 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 SLC25A39Q9BZJ4 359 aaPredicted RBP9.66□□□□□ -0.86
CLIP3-201ENST00000360535 PTPRQQ9UMZ3 2332 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 IGHV1-3A0A0C4DH29 117 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 CCL25O15444 150 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 MYCNOSP40205 109 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 RBPMS2Q6ZRY4 209 aaKnown RBP9.66□□□□□ -0.86
CLIP3-201ENST00000360535 TOMM40O96008 361 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 ARMS2P0C7Q2 107 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 FCGR2BP31994 310 aaPredicted RBP9.66□□□□□ -0.86
CLIP3-201ENST00000360535 FMC1Q96HJ9 113 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 TRGV9Q99603 122 aa9.66□□□□□ -0.86
CLIP3-201ENST00000360535 NUDT3O95989 172 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 BCL6BQ8N143 479 aaPredicted RBP9.65□□□□□ -0.86
CLIP3-201ENST00000360535 VPS25Q9BRG1 176 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 IGF2RP11717 2491 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 A0A1B0GXF2 115 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 ARF6P62330 175 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 RASL11AQ6T310 242 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 IGFL3Q6UXB1 125 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 OR4C5Q8NGB2 326 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 MLST8Q9BVC4 326 aa9.65□□□□□ -0.86
CLIP3-201ENST00000360535 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.64□□□□□ -0.87
CLIP3-201ENST00000360535 HSBP1L1C9JCN9 74 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 SYS1-DBNDD2H3BUS1 97 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 IL4P05112 153 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 KLF5Q13887 457 aaPredicted RBP9.64□□□□□ -0.87
CLIP3-201ENST00000360535 Q86TA4 180 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 PPIAL4CA0A0B4J2A2 164 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 OR2J3O76001 311 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 LTAP01374 205 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 PPIAL4GP0DN37 164 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 C3orf36Q3SXR2 165 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 TMEM116Q8NCL8 245 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 F11RQ9Y624 299 aaKnown RBP9.64□□□□□ -0.87
CLIP3-201ENST00000360535 FAM90A27PA6NNH2 459 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 IGFL4Q6B9Z1 124 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 MRPL52Q86TS9 123 aaKnown RBP9.64□□□□□ -0.87
CLIP3-201ENST00000360535 TEX45Q8NA69 505 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 ZNF738Q8NE65 137 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 ZC2HC1AQ96GY0 325 aa9.64□□□□□ -0.87
CLIP3-201ENST00000360535 APOHP02749 345 aaPredicted RBP9.63□□□□□ -0.87
CLIP3-201ENST00000360535 IGLC1P0CG04 106 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 DLX6P56179 175 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 MAP1AP78559 2803 aaPredicted RBP9.63□□□□□ -0.87
CLIP3-201ENST00000360535 ATP5L2Q7Z4Y8 100 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 PRSS3P2Q8NHM4 247 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 BUB1B-PAK6H3BSN5 160 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 TIMM23O14925 209 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 ASCL5Q7RTU5 278 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 OR8A1Q8NGG7 326 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 KLF12Q9Y4X4 402 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 C19orf71A6NCJ1 209 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 CRYGCP07315 174 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 KLRD1Q13241 179 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 ANKRD39Q53RE8 183 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 LINC00311Q8N616 119 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 OR4F17Q8NGA8 305 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 C8orf49Q96NF6 230 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 MAP1LC3CQ9BXW4 147 aa9.63□□□□□ -0.87
CLIP3-201ENST00000360535 A0A087X0K7 114 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.62□□□□□ -0.87
CLIP3-201ENST00000360535 TEX22C9J3V5 150 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 WFDC3Q8IUB2 231 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 PRSS22Q9GZN4 317 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 SHISA9B4DS77 424 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 INS-IGF2F8WCM5 200 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 SAPCD1Q5SSQ6 148 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 FAM120AOSQ5T036 256 aa9.62□□□□□ -0.87
CLIP3-201ENST00000360535 TMEM191AQ9H0A3 160 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms