RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 CYYR1Q96J86 154 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 ANAPC10Q9UM13 185 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 C9orf172C9J069 976 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 SRSF6Q13247 344 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 TIMM23O14925 209 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 YPEL3P61236 119 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 RHOGP84095 191 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 DUX3Q96PT4 197 aa15.99■□□□□ 0.15
CCDC88B-202ENST00000356786 COL4A6Q14031 1691 aa15.98■□□□□ 0.15
CCDC88B-202ENST00000356786 SPINK8P0C7L1 97 aa15.98■□□□□ 0.15
CCDC88B-202ENST00000356786 GAGE1Q13065 139 aa15.98■□□□□ 0.15
CCDC88B-202ENST00000356786 TRGV9Q99603 122 aa15.98■□□□□ 0.15
CCDC88B-202ENST00000356786 CHAC1Q9BUX1 264 aa15.98■□□□□ 0.15
CCDC88B-202ENST00000356786 PGPEP1Q9NXJ5 209 aa15.98■□□□□ 0.15
CCDC88B-202ENST00000356786 MLNRO43193 412 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 TMEM155Q4W5P6 130 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 TMEM158Q8WZ71 300 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 ARFGEF3Q5TH69 2177 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 SMKR1H3BMG3 65 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 IGLL1P15814 213 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 TMEM167AQ8TBQ9 72 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.97■□□□□ 0.153e-6■■□□□ 11.5
CCDC88B-202ENST00000356786 A0A1B0GWJ7 208 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 Q8TAT8 98 aa15.97■□□□□ 0.15
CCDC88B-202ENST00000356786 TSC2P49815 1807 aa15.96■□□□□ 0.15
CCDC88B-202ENST00000356786 IL18BPO95998 194 aa15.96■□□□□ 0.15
CCDC88B-202ENST00000356786 IGHV1-46P01743 117 aa15.96■□□□□ 0.15
CCDC88B-202ENST00000356786 RPL15P61313 204 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-202ENST00000356786 SLC25A15Q9Y619 301 aa15.96■□□□□ 0.15
CCDC88B-202ENST00000356786 ATXN8Q156A1 80 aa15.96■□□□□ 0.14
CCDC88B-202ENST00000356786 YAE1D1Q9NRH1 226 aa15.96■□□□□ 0.14
CCDC88B-202ENST00000356786 COL6A6A6NMZ7 2263 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 TOMM40O96008 361 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 SPAG8Q99932 426 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 NLRC5Q86WI3 1866 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 CENPVQ7Z7K6 275 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 HEATR5AQ86XA9 2040 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 M0R2P5 195 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 ARMS2P0C7Q2 107 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 CD28P10747 220 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 ZNF114Q8NC26 417 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 SPRR3Q9UBC9 169 aa15.95■□□□□ 0.14
CCDC88B-202ENST00000356786 SH2D1AO60880 128 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 ZNF329Q86UD4 541 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 TCF20Q9UGU0 1960 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 LYNX1G3V0Z9 82 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 LYNX1P0DP58 116 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 RNASE2P10153 161 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 DEFB104AQ8WTQ1 72 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 TMEM238C9JI98 176 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 NPFFR1Q9GZQ6 430 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 MBNL3Q9NUK0 354 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 PRR19A6NJB7 356 aa15.94■□□□□ 0.14
CCDC88B-202ENST00000356786 LINC01549A6NIU2 74 aa15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 USF3Q68DE3 2245 aa15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 ATP5J2P56134 94 aa15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 IL15RAQ13261 267 aa15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 RBMY1BA6NDE4 496 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 RBMY1EA6NEQ0 496 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 RBMY1DP0C7P1 496 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 RBMY1A1P0DJD3 496 aaKnown RBP15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 RBMY1CP0DJD4 496 aa15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 PIMREGQ9BSJ6 248 aa15.93■□□□□ 0.14
CCDC88B-202ENST00000356786 PCNX1Q96RV3 2341 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 SLAQ13239 276 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 ETDBQ3ZM63 59 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 FOXL2NBQ6ZUU3 175 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 ZNF407Q9C0G0 2248 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 K7EP13 123 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 C1orf122Q6ZSJ8 110 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 ITLN2Q8WWU7 325 aaPredicted RBP15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 TMEM190Q8WZ59 177 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 LCNL1Q6ZST4 164 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 TNFRSF14Q92956 283 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 LINC01587Q99440 93 aa15.92■□□□□ 0.14
CCDC88B-202ENST00000356786 FNDC10F2Z333 226 aa15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 UCNP55089 124 aa15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 Q86TA4 180 aa15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 TMEM8BA6NDV4 472 aa15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 IGKV1-16P04430 117 aa15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 C17orf82Q86X59 251 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 SSBP2P81877 361 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 FAM57AQ8TBR7 257 aa15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 V9GYV3 84 aa15.91■□□□□ 0.14
CCDC88B-202ENST00000356786 C2orf82Q6UX34 121 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 TEX43Q6ZNM6 134 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 H0YJW9 148 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 C9orf118A6NHY6 69 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 IGKV1-39P01597 117 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 IGKV1D-39P04432 117 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 ZFP36L1Q07352 338 aaKnown RBP15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 TMEM200BQ69YZ2 307 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 ABCA4P78363 2273 aa15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 TSSC4Q9Y5U2 329 aaPredicted RBP15.9■□□□□ 0.14
CCDC88B-202ENST00000356786 WIPF3A6NGB9 483 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 LYPD6BQ8NI32 183 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 NEU4Q8WWR8 484 aaPredicted RBP15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 WFDC12Q8WWY7 111 aa15.89■□□□□ 0.13
CCDC88B-202ENST00000356786 GFRA4Q9GZZ7 299 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms