RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 A0A1B0GXF2 115 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 NCBP2LA6PVI3 153 aaKnown RBP12.14□□□□□ -0.47
UPF3B-202ENST00000345865 ZNF785A8K8V0 405 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 IGLC2P0DOY2 106 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 CAMPP49913 170 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 TOMM20LQ6UXN7 152 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 C1orf122Q6ZSJ8 110 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 GOLT1AQ6ZVE7 132 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 Q86TA4 180 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 C18orf32Q8TCD1 76 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 KCNS1Q96KK3 526 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 ASCL2Q99929 193 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 RPP21Q9H633 154 aaKnown RBP12.14□□□□□ -0.47
UPF3B-202ENST00000345865 TBL2Q9Y4P3 447 aaKnown RBP12.14□□□□□ -0.47
UPF3B-202ENST00000345865 TRBV19A0A075B6N1 114 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 KIR2DL5BA0A0G2JN68 375 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 KIR2DL5BA0A0G2JPC4 375 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 MRPS12O15235 138 aaKnown RBP12.14□□□□□ -0.47
UPF3B-202ENST00000345865 KIR2DL5AQ8N109 375 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 ARPC1AQ92747 370 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 CHRDL1Q9BU40 450 aa12.14□□□□□ -0.47
UPF3B-202ENST00000345865 WI2-2373I1.2A0A1W2PRP0 233 aa12.13□□□□□ -0.47
UPF3B-202ENST00000345865 SIGLECL1Q8N7X8 197 aa12.13□□□□□ -0.47
UPF3B-202ENST00000345865 Q8N976 141 aa12.13□□□□□ -0.47
UPF3B-202ENST00000345865 SIRPDQ9H106 197 aa12.13□□□□□ -0.47
UPF3B-202ENST00000345865 CACNA1BQ00975 2339 aa12.13□□□□□ -0.47
UPF3B-202ENST00000345865 NPIPB5A8MRT5 1133 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 PMCHP20382 165 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 AMTP48728 403 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 SIGLEC15Q6ZMC9 328 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 TEX43Q6ZNM6 134 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 PRNTQ86SH4 94 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 BPIFA4PQ86YQ2 179 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 FAM19A2Q8N3H0 131 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 VN1R17PQ8TDU5 208 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 NRN1Q9NPD7 142 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 ZNF492Q9P255 531 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 P01737 135 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 IGHV3-23P01764 117 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 EGR2P11161 476 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-202ENST00000345865 FCGR2BP31994 310 aaPredicted RBP12.12□□□□□ -0.47
UPF3B-202ENST00000345865 EBI3Q14213 229 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 UBTD1Q9HAC8 227 aa12.12□□□□□ -0.47
UPF3B-202ENST00000345865 A0A1B0GV90 55 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 GNG7O60262 68 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 ZNF324O75467 553 aaPredicted RBP12.11□□□□□ -0.47
UPF3B-202ENST00000345865 UQCRFS1P47985 274 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 CCDC144NLQ6NUI1 221 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 NIT1Q86X76 327 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 TTC9CQ8N5M4 171 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 AJUBAQ96IF1 538 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 NPIPB6E9PJ23 425 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 NDUFB8O95169 186 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 HLA-DRB1P01911 266 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 FAM120AOSQ5T036 256 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 OR2D3Q8NGH3 330 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 ZNF414Q96IQ9 312 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 PGLYRP4Q96LB8 373 aa12.11□□□□□ -0.47
UPF3B-202ENST00000345865 ALKBH7Q9BT30 221 aaPredicted RBP12.11□□□□□ -0.47
UPF3B-202ENST00000345865 A8MWL6 223 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 C19orf84I3L1E1 186 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 OVOL3O00110 214 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 OR2J3O76001 311 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 KRTDAPP60985 99 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 CT83Q5H943 113 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 MINOS1Q5TGZ0 78 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 ATP5L2Q7Z4Y8 100 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 MINOS1-NBL1R4GNA1 71 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 IGHV7-81A0A0B4J1V7 117 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 M0R3E3 92 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 TMEM11P17152 192 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 MFAP4P55083 255 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 OR4F17Q8NGA8 305 aa12.1□□□□□ -0.47
UPF3B-202ENST00000345865 ZMAT5Q9UDW3 170 aaKnown RBP12.1□□□□□ -0.47
UPF3B-202ENST00000345865 EREGO14944 169 aa12.09□□□□□ -0.47
UPF3B-202ENST00000345865 ITLN2Q8WWU7 325 aaPredicted RBP12.09□□□□□ -0.47
UPF3B-202ENST00000345865 ZC2HC1AQ96GY0 325 aa12.09□□□□□ -0.47
UPF3B-202ENST00000345865 OOSP1A8MZH6 123 aa12.09□□□□□ -0.47
UPF3B-202ENST00000345865 COL8A1P27658 744 aa12.09□□□□□ -0.47
UPF3B-202ENST00000345865 HBBP68871 147 aa12.09□□□□□ -0.47
UPF3B-202ENST00000345865 Q8N9W7 124 aa12.09□□□□□ -0.47
UPF3B-202ENST00000345865 DAZAP1Q96EP5 407 aaKnown RBP12.09□□□□□ -0.47
UPF3B-202ENST00000345865 ZNF48Q96MX3 618 aaPredicted RBP12.09□□□□□ -0.47
UPF3B-202ENST00000345865 TRAV30A0A087WSZ9 112 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 KLF5Q13887 457 aaPredicted RBP12.08□□□□□ -0.48
UPF3B-202ENST00000345865 Q56UQ5 140 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 C16orf54Q6UWD8 224 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 LINC00469Q8N7U9 141 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 PRORYQ9H606 182 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 C21orf62Q9NYP8 219 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 PAM16Q9Y3D7 125 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 SPTAN1Q13813 2472 aaKnown RBP12.08□□□□□ -0.48
UPF3B-202ENST00000345865 IGHV2-70DA0A0C4DH43 119 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 OR2T8A6NH00 312 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 NTF3P20783 257 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 EFNA4P52798 201 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 LMO4P61968 165 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 URB1-AS1Q96HZ7 61 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 BPESC1Q9GZL8 116 aa12.08□□□□□ -0.48
UPF3B-202ENST00000345865 TRBV6-1A0A0K0K1D8 114 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms