RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 RNF5Q99942 180 aa3.9□□□□□ -1.79
CSMD3-203ENST00000343508 K7EP34 96 aa3.9□□□□□ -1.79
CSMD3-203ENST00000343508 ATXN8Q156A1 80 aa3.9□□□□□ -1.79
CSMD3-203ENST00000343508 LSM4Q9Y4Z0 139 aaKnown RBP3.9□□□□□ -1.79
CSMD3-203ENST00000343508 ESPL1Q14674 2120 aa3.9□□□□□ -1.79
CSMD3-203ENST00000343508 SPANXDQ9BXN6 97 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 SCRT2Q9NQ03 307 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 GAGE2BQ13066 116 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 GAGE2EQ4V326 116 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 PLSCR4Q9NRQ2 329 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 GAGE2DQ9UEU5 116 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 GAGE12HA6NDE8 117 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 LTBRP36941 435 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 FAM201AQ5SY85 155 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 ADAMTSL5Q6ZMM2 481 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 GTSCR1Q86UQ5 136 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 CEND1Q8N111 149 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 HS3ST6Q96QI5 342 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 CACNA1DQ01668 2161 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 UBE2L6O14933 153 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 BSPH1Q075Z2 132 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 EML5Q05BV3 1969 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 TMEM8BA6NDV4 472 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 SPINK8P0C7L1 97 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 TRAV8-1A0A0A6YYK1 113 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 CD300EQ496F6 205 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-203ENST00000343508 TMEM238C9JI98 176 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 TFF1P04155 84 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 Q86TA4 180 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 VKORC1Q9BQB6 163 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 KIAA1549Q9HCM3 1950 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 SH2D7A6NKC9 451 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-203ENST00000343508 FAM90A27PA6NNH2 459 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 ZNF138P52744 262 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 DEFB124Q8NES8 71 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 SH2D1AO60880 128 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 LAMA3Q16787 3333 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-203ENST00000343508 LTAP01374 205 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 ZNF71Q9NQZ8 489 aaPredicted RBP3.89□□□□□ -1.79
CSMD3-203ENST00000343508 TMEM14CQ9P0S9 112 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 ZNF833PQ6ZTB9 187 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 TMEM158Q8WZ71 300 aa3.89□□□□□ -1.79
CSMD3-203ENST00000343508 PINLYPA6NC86 204 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 CCL3L1P16619 93 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 FOXG1P55316 489 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PRR20EP86478 221 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PRR20CP86479 221 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PRR20DP86480 221 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PRR20BP86481 221 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PRR20AP86496 221 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 ARMS2P0C7Q2 107 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 AZU1P20160 251 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 CEACAM8P31997 349 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-203ENST00000343508 KHDC1LQ5JSQ8 128 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 FAM104BQ5XKR9 115 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 AMN1Q8IY45 258 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 BEX4Q9NWD9 120 aaPredicted RBP3.88□□□□□ -1.79
CSMD3-203ENST00000343508 KLRB1Q12918 225 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 RNF182Q8N6D2 247 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PI4KAP42356 2102 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 IGHV1-8P0DP01 117 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 ERG28Q9UKR5 140 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 K7EMI3 77 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 HTN1P15515 57 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 TAL2Q16559 108 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 Q0VFX4 171 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PRSS8Q16651 343 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 PROK2Q9HC23 129 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 FAM27E3Q08E93 113 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 RNF138Q8WVD3 245 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 IGLV2-14P01704 120 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 FAM74A4Q5TZK3 123 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 WDR86Q86TI4 376 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 THAP8Q8NA92 274 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 VGLL1Q99990 258 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 HCFC1P51610 2035 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 TRAV40A0A0B4J280 105 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 C15orf65H3BRN8 121 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 BUB1B-PAK6H3BSN5 160 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 SIGLEC15Q6ZMC9 328 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 C9orf106Q8NAJ2 232 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 FXYD5Q96DB9 178 aa3.88□□□□□ -1.79
CSMD3-203ENST00000343508 IGKV2-40A0A087WW87 121 aaPredicted RBP3.87□□□□□ -1.79
CSMD3-203ENST00000343508 NPFFO15130 113 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 NKX2-8O15522 239 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 NUPR1O60356 82 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 IGKV2D-40P01614 121 aaPredicted RBP3.87□□□□□ -1.79
CSMD3-203ENST00000343508 C3orf36Q3SXR2 165 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 FAM106AQ4KMX7 169 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 EXPH5Q8NEV8 1989 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 IGHV1-3A0A0C4DH29 117 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 LINC00477Q96M19 166 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 YAE1D1Q9NRH1 226 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 POU2AF1Q16633 256 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 SIGLEC9Q9Y336 463 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 TNRC6BQ9UPQ9 1833 aaKnown RBP3.87□□□□□ -1.79
CSMD3-203ENST00000343508 NCOA6Q14686 2063 aaPredicted RBP3.87□□□□□ -1.79
CSMD3-203ENST00000343508 IGHV1-46P01743 117 aa3.87□□□□□ -1.79
CSMD3-203ENST00000343508 CFHR2P36980 270 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 261.4 ms