RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ZNF600Q6ZNG1 722 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 OR4X2Q8NGF9 303 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 SUN5Q8TC36 379 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 C17orf77Q96MU5 243 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 NKX6-2Q9C056 277 aaPredicted RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 PARLQ9H300 379 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 ZNF586Q9NXT0 402 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 ZNF580Q9UK33 172 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 TRBV20OR9-2A0A075B6H5 130 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 PGPEP1LA6NFU8 196 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 ZNF98A6NK75 572 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 ZNF727A8MUV8 499 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 M0R036 132 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 MRPS12O15235 138 aaKnown RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 APOHP02749 345 aaPredicted RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 NBEAP1P0C6P0 100 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 SRD5A1P18405 259 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 CRYBB3P26998 211 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 TAGLN2P37802 199 aaKnown RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 RANP62826 216 aaKnown RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 SUMO1P63165 101 aaKnown RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 UNQ9165/PRO28630Q6UXU0 137 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 Q6ZSV7 163 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 KRTAP19-1Q8IUB9 90 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 CBLN2Q8IUK8 224 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 Q8N2B8 174 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 TMEM86BQ8N661 226 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 USMG5Q96IX5 58 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 SMIM7Q9BQ49 75 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 ELOVL1Q9BW60 279 aa3.19□□□□□ -1.9
MCF2-201ENST00000338585 AURKAIP1Q9NWT8 199 aaPredicted RBP3.19□□□□□ -1.9
MCF2-201ENST00000338585 CUBNO60494 3623 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.18□□□□□ -1.9
MCF2-201ENST00000338585 A0A1W2PRE2 83 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 C7orf77A4D0Y5 90 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 INAFM1C9JVW0 142 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 DNASE2O00115 360 aaPredicted RBP3.18□□□□□ -1.9
MCF2-201ENST00000338585 BMPR1BO00238 502 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 SLC17A3O00476 420 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 PDE6DO43924 150 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 SCGB2A1O75556 95 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 SNAPINO95295 136 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 GNG5P63218 68 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 SRSF2Q01130 221 aaKnown RBP3.18□□□□□ -1.9
MCF2-201ENST00000338585 C18orf65Q6ZTR6 163 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 STXBP6Q8NFX7 210 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 NIPSNAP3BQ9BS92 247 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 GAR1Q9NY12 217 aaKnown RBP3.18□□□□□ -1.9
MCF2-201ENST00000338585 TMEM14CQ9P0S9 112 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 RABAC1Q9UI14 185 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 SELENOKQ9Y6D0 94 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 HIVEP1P15822 2718 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 FN1P02751 2386 aaKnown RBP3.18□□□□□ -1.9
MCF2-201ENST00000338585 A0A0G2JLM5 398 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 CYSRT1A8MQ03 144 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 F6UZH7 168 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 IGLC2P0DOY2 106 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 CD99P14209 185 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 EDN2P20800 178 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 MYCNOSP40205 109 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 RELQ04864 619 aaPredicted RBP3.18□□□□□ -1.9
MCF2-201ENST00000338585 LINC01559Q495D7 138 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 C4orf48Q5BLP8 95 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 TCTEX1D4Q5JR98 221 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 TEX38Q6PEX7 206 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 BPIFA4PQ86YQ2 179 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 EXOC3-AS1Q8N2X6 119 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 TVP23CQ96ET8 276 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 LINC00479Q96M42 142 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 SDF2L1Q9HCN8 221 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 RPS10P5Q9NQ39 176 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 TMEM160Q9NX00 188 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 RPH3ALQ9UNE2 315 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 SMAD5-AS1Q9Y6J3 95 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 ARL2-SNX15V9GYD0 113 aa3.18□□□□□ -1.9
MCF2-201ENST00000338585 TRBV19A0A075B6N1 114 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 ZNF320A2RRD8 509 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 PGPA6NDG6 321 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 PRSS47A8MTI9 375 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 BUB3O43684 328 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 HIST1H1EP10412 219 aaKnown RBP3.17□□□□□ -1.9
MCF2-201ENST00000338585 RPL35P42766 123 aaKnown RBP3.17□□□□□ -1.9
MCF2-201ENST00000338585 RPL23P62829 140 aaKnown RBP3.17□□□□□ -1.9
MCF2-201ENST00000338585 SLC35B1P78383 322 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 FOXE3Q13461 319 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 ADIRFQ15847 76 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 TMEM241Q24JQ0 296 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 OR8I2Q8N0Y5 310 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 KLHDC1Q8N7A1 406 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 OR4F17Q8NGA8 305 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 MYOZ3Q8TDC0 251 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 C11orf52Q96A22 123 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 SGK494Q96LW2 274 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 Q9H3A6 140 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 PEF1Q9UBV8 284 aaKnown RBP3.17□□□□□ -1.9
MCF2-201ENST00000338585 CDC42EP3Q9UKI2 254 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 BAHCC1Q9P281 2608 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 NF1P21359 2839 aa3.17□□□□□ -1.9
MCF2-201ENST00000338585 TRAV34A0A0B4J273 112 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 123.3 ms