RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 FOXL1Q12952 345 aa13.16□□□□□ -0.3
DDX41-201ENST00000330503 PRSS57Q6UWY2 283 aa13.16□□□□□ -0.3
DDX41-201ENST00000330503 EEF1AKMT3Q96AZ1 226 aa13.16□□□□□ -0.3
DDX41-201ENST00000330503 NOL4LQ96MY1 436 aaPredicted RBP13.16□□□□□ -0.3
DDX41-201ENST00000330503 SLC17A3O00476 420 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 PHOX2AO14813 284 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 SCGB2A1O75556 95 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 IGHV4-59P01825 116 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 ATP5G2Q06055 141 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 TMEM183BQ1AE95 376 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 TOMM20LQ6UXN7 152 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 EXOC3-AS1Q8N2X6 119 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 C5orf17Q8NAS9 161 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 TRBV7-1A0A0A6YYK4 115 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 A0A1W2PPQ1 181 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 SNRPEP62304 92 aaKnown RBP13.15□□□□□ -0.3
DDX41-201ENST00000330503 OR4F17Q8NGA8 305 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 SRD5A3Q9H8P0 318 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 V9GYV3 84 aa13.15□□□□□ -0.3
DDX41-201ENST00000330503 IGHV3OR16-8A0A075B7F1 116 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 C5orf52A6NGY3 159 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 ERVFC1-1P60608 527 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 S100A7AQ86SG5 101 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 BAGE2Q86Y30 109 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 NHLRC2Q8NBF2 726 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 RNASE7Q9H1E1 156 aaKnown RBP13.14□□□□□ -0.31
DDX41-201ENST00000330503 ZFAND3Q9H8U3 227 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 RNF24Q9Y225 148 aa13.14□□□□□ -0.31
DDX41-201ENST00000330503 TGOLN2O43493 480 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 TCRAP04437 139 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 IER3P46695 156 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 KCNIP4Q6PIL6 250 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 SGK494Q96LW2 274 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 ATG101Q9BSB4 218 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 OSTCQ9NRP0 149 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 GAR1Q9NY12 217 aaKnown RBP13.13□□□□□ -0.31
DDX41-201ENST00000330503 RABAC1Q9UI14 185 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 RPH3ALQ9UNE2 315 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 FAM223BA6NKX1 122 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 BRI3O95415 125 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 TRGV3P03979 118 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 MGST1P10620 155 aaKnown RBP13.13□□□□□ -0.31
DDX41-201ENST00000330503 SIGLEC15Q6ZMC9 328 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 FAM223AQ8IWN6 122 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 IL36BQ9NZH7 164 aa13.13□□□□□ -0.31
DDX41-201ENST00000330503 TYMSP04818 313 aa13.12□□□□□ -0.31
DDX41-201ENST00000330503 SMUG1Q53HV7 270 aa13.12□□□□□ -0.31
DDX41-201ENST00000330503 FRZBQ92765 325 aa13.12□□□□□ -0.31
DDX41-201ENST00000330503 PRRC2AP48634 2157 aaKnown RBP13.12□□□□□ -0.31
DDX41-201ENST00000330503 CLPSL1A2RUU4 121 aa13.12□□□□□ -0.31
DDX41-201ENST00000330503 RPL15P61313 204 aaKnown RBP13.12□□□□□ -0.31
DDX41-201ENST00000330503 C9orf139Q6ZV77 190 aa13.12□□□□□ -0.31
DDX41-201ENST00000330503 GNB4Q9HAV0 340 aa13.12□□□□□ -0.31
DDX41-201ENST00000330503 SMAD5-AS1Q9Y6J3 95 aa13.12□□□□□ -0.31
DDX41-201ENST00000330503 BMPR1BO00238 502 aa13.11□□□□□ -0.31
DDX41-201ENST00000330503 CYB5R2Q6BCY4 276 aa13.11□□□□□ -0.31
DDX41-201ENST00000330503 LYPD1Q8N2G4 141 aa13.11□□□□□ -0.31
DDX41-201ENST00000330503 ATP6V0BQ99437 205 aa13.11□□□□□ -0.31
DDX41-201ENST00000330503 KLK15Q9H2R5 256 aa13.11□□□□□ -0.31
DDX41-201ENST00000330503 PPP5D1E7EU14 171 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 AP4M1O00189 453 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BKO60814 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 S100A6P06703 90 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BJP06899 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BOP23527 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BBP33778 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BDP58876 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 UBE2G1P62253 170 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BCP62807 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST2H2BEQ16778 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BHQ93079 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BNQ99877 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 HIST1H2BMQ99879 126 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 MLST8Q9BVC4 326 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 S100A9P06702 114 aaKnown RBP13.1□□□□□ -0.31
DDX41-201ENST00000330503 TPPP2P59282 170 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 CFHR3Q02985 330 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 FMC1Q96HJ9 113 aa13.1□□□□□ -0.31
DDX41-201ENST00000330503 ZNF320A2RRD8 509 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 H3BUA1 57 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 IGLV1-40P01703 118 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 IGLV2-11P01706 119 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 TRGC1P0CF51 173 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 Q6YL49 198 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 CIARTQ8N365 385 aaPredicted RBP13.09□□□□□ -0.31
DDX41-201ENST00000330503 GPR82Q96P67 336 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 LTAP01374 205 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 RPL7P18124 248 aaKnown RBP13.09□□□□□ -0.31
DDX41-201ENST00000330503 PDE6HQ13956 83 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 IBA57Q5T440 356 aaKnown RBP13.09□□□□□ -0.31
DDX41-201ENST00000330503 GOLT1AQ6ZVE7 132 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 OR8I2Q8N0Y5 310 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 WFDC11Q8NEX6 87 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 CMTM2Q8TAZ6 248 aa13.09□□□□□ -0.31
DDX41-201ENST00000330503 TEX15Q9BXT5 2789 aa13.08□□□□□ -0.32
DDX41-201ENST00000330503 UBE2CO00762 179 aa13.08□□□□□ -0.32
DDX41-201ENST00000330503 RPEL1Q2QD12 228 aa13.08□□□□□ -0.32
DDX41-201ENST00000330503 TRAV8-1A0A0A6YYK1 113 aa13.07□□□□□ -0.32
DDX41-201ENST00000330503 BUB3O43684 328 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms